PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G256300.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 303aa    MW: 32832.7 Da    PI: 10.4736
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G256300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.32.6e-1546764878
                        SEEETTT--SS--S-STTTT-------S--- CS
                 SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                         fh+l efD++krsCrrrLa+hnerrrk+q+
  Prupe.6G256300.2.p 46 GFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 76
                        6***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114111.896174IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.94E-124579IPR004333Transcription factor, SBP-box
PfamPF031103.3E-84673IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPKLTIPGTK SVACTLRPPW SLLLVLNRGF ANSVAGLVGY LNRMNGFHQL PEFDQGKRSC  60
RRRLAGHNER RRKPQPGSIL SARFGRLSSS IYENSSRVGS FLMDFTAYPR LSGRDAWATT  120
RTSERVPGNQ NSNDTGKFLQ HPWQSNSEIT PSGLYLQGSA GRSNYPGPGI PPGECVTGVT  180
DSSCALSLLS SQPWGSRNRV SGVGMNTVIN TQGPPVGQPI THAGTANHFP TTSWGFKGNE  240
AGSSSHEMLP DLGLGQISQP PLSTQYSGVL ELSQQSSRRQ QQMELGHTRG YDTSSQHIHW  300
SL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G256300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205341.11e-171squamosa promoter-binding-like protein 9
TrEMBLA0A251NVW60.0A0A251NVW6_PRUPE; Uncharacterized protein
STRINGEMJ065401e-170(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.19e-33squamosa promoter binding protein-like 9