PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G253200.2.p | ||||||||
Common Name | PRUPE_ppa021369mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 228aa MW: 25362.7 Da PI: 6.7741 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 60.9 | 2e-19 | 68 | 148 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 + +Lr+++ k ++ e+ g++t+ e a+ ++se + kn+ RR+YD+lNVLeal++i++ k+ei+w+g Prupe.6G253200.2.p 68 GGGLRQFSAK---VCDLLESkGRTTYAELADYIMSElagndsetatslsefNDKNIPRRVYDALNVLEALDIITR-VKKEIKWNG 148 679*******...77776666******************************999*********************.9******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.5E-30 | 64 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.7E-20 | 66 | 148 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.0E-18 | 69 | 148 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.98E-17 | 69 | 149 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF144074 | 1.86E-13 | 155 | 216 | No hit | No description |
Pfam | PF08781 | 2.1E-9 | 156 | 216 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDDNYSGDSL GGFFQKHSSA ESSVSASLNN AAAFGSARRS ITFDHDDTGT ASVETNAPKK 60 KRVSRMTGGG LRQFSAKVCD LLESKGRTTY AELADYIMSE LAGNDSETAT SLSEFNDKNI 120 PRRVYDALNV LEALDIITRV KKEIKWNGIP DRKMDLEGMK AECVRMMNRI GRKTAYLKDL 180 EEQFADLQNL MFCNKELLKS GNTHPGGFSL PFILVQVYYF VIFCWFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 4e-23 | 68 | 150 | 9 | 90 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G253200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208610.1 | 1e-159 | transcription factor-like protein DPA | ||||
Swissprot | Q9FNY2 | 6e-49 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A251NVP2 | 1e-169 | A0A251NVP2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09809 | 1e-158 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 8e-51 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G253200.2.p |
Entrez Gene | 18772337 |