PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G238500.1.p | ||||||||
Common Name | PRUPE_ppa003849mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 547aa MW: 58930.4 Da PI: 9.7019 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Prupe.6G238500.1.p 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 12 | 0.00065 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Prupe.6G238500.1.p 147 WKCDKCSKKYAVQSDWKAHSKTC 169 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.23E-7 | 70 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.23E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 150 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0045604 | Biological Process | regulation of epidermal cell differentiation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MQMMSGDGFS IIPSAIDGFA QEHQLNANPS SQKPNPNNPV AKKKRNLPGT PDPDAEVVAL 60 SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRLNKEVKKK VYICPEKSCV 120 HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKTCG TREYKCDCGT 180 LFSRKDSFIT HRAFCDALTE ESARLTTSVA GAATNLNFGN ETMLNNTMMH NGHAVQDDVS 240 QISQYGQGLI RQDFNGLDHR QQQHEKPSLS LWLNQQQANS NSHQLNLMDN MAANPNQLYV 300 TSSSSTAFPE MAQMPPANNL NQLFGSPNAM STFGSSNINL FGSGSASSST STSAANNLSL 360 SSPIQEGGIH KGNSNLVGSG GLSKPPAAPM SATALLQKAA QLGSTRSSSN NNNNNQGSSS 420 SSSLGVNVMS SSPSSSNTLI RSFSSNMNQN RSNELHQIVQ NANQSGGGGA NSNTSSTLEQ 480 LMNNITHRGS STIGNLDHQN SLTRDFLGMG GGGAAADQLS HNNRPMFSPQ ELAKFASSMS 540 QFTGNH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 143 | 207 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 143 | 207 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G238500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208453.2 | 0.0 | zinc finger protein JACKDAW | ||||
TrEMBL | A0A251NUX2 | 0.0 | A0A251NUX2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09652 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03150.1 | 1e-104 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G238500.1.p |
Entrez Gene | 18774314 |