PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G236200.3.p | ||||||||
Common Name | PRUPE_ppa002195mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 697aa MW: 76616.6 Da PI: 6.5083 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF Prupe.6G236200.3.p 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL- 208 89****************************996555555..89***********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++ l+v+++r+ Prupe.6G236200.3.p 209 -RAENGDLCVGIRRA 222 .4488999****997 PP | |||||||
2 | Auxin_resp | 115.2 | 5.8e-38 | 290 | 373 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++p+rWp+S+Wr+L+ Prupe.6G236200.3.p 290 AATLASNGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEPLRWPESPWRLLQ 373 6899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-37 | 115 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-29 | 117 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.44E-21 | 120 | 221 | No hit | No description |
PROSITE profile | PS50863 | 13.112 | 121 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-22 | 121 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-33 | 290 | 373 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.66 | 615 | 696 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MITFMDSKEK LKEGEKCLDP QLWHACAGGM VQMPPVNAKV FYFPQGHAEH ACGPVDFRNF 60 PRVPPYIFCR VSAIKFMADP ETDEVYAKIR LVPLSASEAG YEDDGIGGLN GSETPDKPAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPTG 240 GNCTMPYGGY SAFLREDENK LMRNGNGNGS NSNGSLMGKG KVGPESVFEA ATLASNGQPF 300 EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE 360 PLRWPESPWR LLQVTWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPQHP 420 DFPFEGQLPM PTFSGNLLGP SSPFGCLPDK TPAGMQGARH GHYGLSLSDM HLNKLQTGLF 480 PAGFTPLDHA ATATKFSNNT MTQKPTMSEN VSCLLTMAHS TQTSKKPDDV KPPQLVLFGQ 540 PILTEQQISL SCSGDTVSPV LTGNSSSDGN AEKTANLSDN SGSALHQQSL QERSSCEGFQ 600 WYKDTRQETE PSLETGHCKV FMESEDVGRT LDLSVFGSYD ELNRKLADMF GIENSETLNH 660 VLYRDATGAV KHIGDEPFRY ESIPTELCNG SVEWRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-82 | 18 | 394 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G236200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ177422 | 0.0 | FJ177422.1 Malus x domestica putative auxin response factor ARF16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421974.1 | 0.0 | auxin response factor 18 isoform X4 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A251NUV1 | 0.0 | A0A251NUV1_PRUPE; Auxin response factor | ||||
STRING | EMJ09252 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G236200.3.p |
Entrez Gene | 18775508 |
Publications ? help Back to Top | |||
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