PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G234200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 175aa MW: 19109.3 Da PI: 6.2225 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.8 | 1.9e-34 | 8 | 124 | 7 | 104 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 ++ ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+ +i ++tgt++ +a+ ++++ s+s++ +s + Prupe.6G234200.1.p 8 SSRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAESSIVAATGTGTLPAEPISTSAPSVSSQVPSLAcrahplssl 98 689********************************************************88888666444444444433333445555566 PP TCP 89 ..........kaaksaakskksqksa 104 +++ +a+++++++++ Prupe.6G234200.1.p 99 ngggqfmyplVSSAHQAQPNQPHQQP 124 66777777752222222444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-30 | 8 | 113 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.157 | 9 | 63 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MHLFNSASSR DRHTKVNGRG RRVRMPAMCA ARIFQLTREL GHRSDGETIE WLLRHAESSI 60 VAATGTGTLP AEPISTSAPS VSSQVPSLAC RAHPLSSLNG GGQFMYPLVS SAHQAQPNQP 120 HQQPSIRLDL CQPAGLDYTE YRQHMPFTSL LLHPAENEEE EDGQQEEALC LEDG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G234200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421941.1 | 1e-123 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 2e-35 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A251NUR8 | 1e-126 | A0A251NUR8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008243974.1 | 1e-107 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 8e-35 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G234200.1.p |