PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G232900.1.p | ||||||||
Common Name | PRUPE_ppa001536mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 820aa MW: 90169.9 Da PI: 7.0204 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 52 | 94 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + q++++++ + Prupe.6G232900.1.p 52 AWTHQEEESFFAALRQVGKN-FEKITCRVQ-SKNKDQVRHYYYRL 94 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.86E-10 | 43 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.4E-5 | 46 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.128 | 48 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 3.5E-4 | 49 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-4 | 52 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MQIGSTVIVN SEAHPHQGGF FVQDGGPGLA PSTSNHVALQ QPVKKPTRQW AAWTHQEEES 60 FFAALRQVGK NFEKITCRVQ SKNKDQVRHY YYRLVRRMNK LLGPGLYLDS KNSKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKIFIEA LEHQLLKDRK KSVRKRPSQG ENCPPNAPST 180 VSNQNRPSGH DNRTVKLVLV DSHNIQKLGP GKASLKRNVN IGVNRSNKGD SSTMKPARQR 240 RKPGAISSAA YKKWEKAAIA GVSLVADAAE HLERAITDKE VEQDRSAAGQ SSAVPVGKVL 300 PPMPAFVQNI DAESGTNNCM KLKLQLFPID DGTRRALEND KHNPYLELTL STRKKISSVL 360 DHLNRKWGNS NVASGELTLF HYSVQRDNLM GYPRWTQDSI VSAADVYATI GCPPVFRLRY 420 GWFSNTELGS VGLQTPVASC SNQGEHDINE EKRKEQIVDS APVSPLSTDN QSADIHKDHL 480 TSTNNSCVLS ALAYQHSQPQ LPERGKPRYN HSLGLTSDEE PNEINGYICA SPNDNFVGDP 540 TEITSWHKKE AGDQNTSRHR GEVDDLRSIT GTALSAGVWA DSLTNISMGD LLSGVSHDLD 600 TNCIDPPVAE GSQCLQQIPF SCDSFDAVIA AHISRQNKTG CQPTMECHVS SIWDAEETCD 660 AFSFQKNSVF CQEVSSLSAV APPGACKQTA VASSAGSDCM VEEIPVVERP IDDPPRGPID 720 ECQSDPRILE SSVKDFNALT DIYWPESLGP LDLEMPSSKY HSEDFVLSDS LSGLNRLIAS 780 SLDAFQNCSF FGANKREPTA SVEARETASF SDFKIGNGV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G232900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422000.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A251NUP7 | 0.0 | A0A251NUP7_PRUPE; Uncharacterized protein | ||||
STRING | XP_008243983.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9883 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G232900.1.p |
Entrez Gene | 18775187 |