PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G229600.1.p
Common NamePRUPE_ppa023805mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 265aa    MW: 30230.4 Da    PI: 8.1545
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G229600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.4e-1725113498
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         +++  d+++   l++pk+f++++++    s  + l+ +sg +Wev++  + ++g+++l +GW eF k   L++g ++vFk+d +s+f   v
  Prupe.6G229600.1.p  25 KMILDDTSRDTKLRIPKSFVKKYEKH--LSNPVHLKLPSGSEWEVEV--TTCDGEVWLDRGWPEFSKFYSLEQGGSLVFKYDVNSKF--QV 109
                         566678888899***********844..7788***************..********************************998999..88 PP

                         EEE- CS
                  B3  95 kvfr 98 
                          +++
  Prupe.6G229600.1.p 110 CILD 113
                         8776 PP
2B334.63.5e-11178263998
                         HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         ++++s+r+ +p +f +++ +++k +  t +l   + +s  v l +  + +++ ++ GW  F+++n L+++D+++F+l+++++ +l+v++fr
  Prupe.6G229600.1.p 178 SSSSSKRVHVPLSFSKHFiKLEK-Q--TAKLLV-RKKSCCVSL-IAHSVNTFPFSVGWAAFARENCLRARDVCIFELVDKNDISLKVHMFR 263
                         56778899******965554443.3..455554.558888888.366667799*************************9999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2116115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2116114IPR015300DNA-binding pseudobarrel domain
CDDcd100176.85E-1721113No hitNo description
PROSITE profilePS5086313.45122115IPR003340B3 DNA binding domain
SMARTSM010199.4E-1423115IPR003340B3 DNA binding domain
PfamPF023623.6E-1426113IPR003340B3 DNA binding domain
SMARTSM010190.014168263IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-14178263IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-10178263IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-13179263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-9183263No hitNo description
PROSITE profilePS508638.275226264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSASRRQKID HEWPAFSATT PLFLKMILDD TSRDTKLRIP KSFVKKYEKH LSNPVHLKLP  60
SGSEWEVEVT TCDGEVWLDR GWPEFSKFYS LEQGGSLVFK YDVNSKFQVC ILDAKTNEDD  120
ENNSVEILED YDDENDNSAE IFGDYQPCPK TRQKSGPLSC PLPRKKTRLS THSSPEISSS  180
SSKRVHVPLS FSKHFIKLEK QTAKLLVRKK SCCVSLIAHS VNTFPFSVGW AAFARENCLR  240
ARDVCIFELV DKNDISLKVH MFRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G229600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021829752.11e-135B3 domain-containing protein At3g18960-like isoform X1
TrEMBLA0A251NWZ90.0A0A251NWZ9_PRUPE; Uncharacterized protein
STRINGEMJ093460.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-19B3 family protein