PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G223100.1.p | ||||||||
Common Name | PRUPE_ppa010480mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 26876.2 Da PI: 9.7175 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 62 | 1.6e-19 | 24 | 98 | 23 | 97 |
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 p + ++++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l+ Prupe.6G223100.1.p 24 PRSPSHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLR 98 45556999*************************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.942 | 1 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-15 | 26 | 96 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MPSSPKGLQR ILHAPPLPPV DRNPRSPSHA TVFVAKFFGR AGLMSFISAV PDSQRPVLFQ 60 SLLFEACGRT VNPVNGAVGL LWTGNWHVCQ AAVETVLRGG TLRPIPELLG GGSTSDEASD 120 ADGGGVNNCT DMWRLRDPSH NSGSSSRFTS SRSARVSSPK RKRSADEESS TKVLQLQHHA 180 DLDLRLTPSP TFKAKPKPET RRAGTPSMNS EESVVTTCFE SGLPDNHHQY NQHSYGVGAE 240 RKLLNLFP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.14389 | 1e-98 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G223100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205779.2 | 1e-162 | LOW QUALITY PROTEIN: LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 8e-64 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | M5WCH6 | 0.0 | M5WCH6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06978 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-59 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G223100.1.p |
Entrez Gene | 18772176 |