PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G219800.2.p
Common NamePRUPE_ppa009220mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 302aa    MW: 32815.8 Da    PI: 10.3261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G219800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.2e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Prupe.6G219800.2.p  5 KQKWTAEEEAALKAGVLKHGAGKWRTILTDPEfnsilHLRSNVDLKDKWRN 55
                        79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.803161IPR017930Myb domain
SuperFamilySSF466896.13E-15269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-12456IPR009057Homeodomain-like
SMARTSM007177.1E-6459IPR001005SANT/Myb domain
PfamPF002492.1E-7555IPR001005SANT/Myb domain
CDDcd116602.83E-17657No hitNo description
PROSITE profilePS5150425.72116187IPR005818Linker histone H1/H5, domain H15
SMARTSM005269.7E-16117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-19117196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-17118192IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.5E-11124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFNSI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRNLPNPK HDNNPLAVST VIQSHEEIVD AKPLAISGGK LQTTESKQPI  120
ARLDHLILEA ITNLKELGGS DRAAIAMYIE EQYWAPPNLK KLLSSKLKHM VANGKLIKVK  180
HRYRIAPSSA SSEKRRSSSM LLLEGKQKDS SRADKSNVNI LTKSQVDADL SKMRSMTAQE  240
AAAAAAQAVA EAEAAIAAAE EAAREAEAAE AEAEAAQVFA KAAMKALKCR RLDLDMKLAH  300
G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.56611e-108fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G219800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744770.0DQ074477.1 Malus x domestica MYBR6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205635.10.0telomere repeat-binding factor 2
RefseqXP_008237807.10.0PREDICTED: telomere repeat-binding factor 2
RefseqXP_008237815.10.0PREDICTED: telomere repeat-binding factor 2
RefseqXP_008237823.10.0PREDICTED: telomere repeat-binding factor 2
RefseqXP_008237830.10.0PREDICTED: telomere repeat-binding factor 2
RefseqXP_020421050.10.0telomere repeat-binding factor 2
RefseqXP_020421051.10.0telomere repeat-binding factor 2
RefseqXP_020421052.10.0telomere repeat-binding factor 2
SwissprotQ9FJW52e-86TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLM5VZE60.0M5VZE6_PRUPE; Uncharacterized protein
STRINGXP_008237807.10.0(Prunus mume)
STRINGEMJ068340.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.29e-76MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]