PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G211900.1.p | ||||||||
Common Name | PRUPE_ppa007561mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 364aa MW: 40079.1 Da PI: 7.1679 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.4e-12 | 186 | 232 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++++k+Lq Prupe.6G211900.1.p 186 EHIMAERKRREKLSERFIALSAIVPGL-----KKMDKASVLGDAIKHVKQLQ 232 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 185 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.1E-16 | 186 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 186 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.69E-12 | 187 | 236 | No hit | No description |
SMART | SM00353 | 3.1E-14 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MDISSAKWFS ELGIDDYNFI PQCDLNTLDE GFTAQDIATA LGENFKQSLS SESYSSYPTL 60 TTQNTKTTTT TLSGGSSINK TSQTSFERPA KQLKTSNWNS GITEHVSPKP SSSSSQILSF 120 ESSSSPSSKP QHFCNNFDST LKPKDEAPSQ INMQFSPLIS KSSIKDCSQG TKRPYSITRT 180 PSHAQEHIMA ERKRREKLSE RFIALSAIVP GLKKMDKASV LGDAIKHVKQ LQERVKVLEE 240 QTKKRTVESV VFVKKSQLSA DDGTSSCGES FDAHSDEASL PEIEAKVSET DVLIRIHCEK 300 QKGFVVKILS EVEKLQLSVV NSSVLPFGNS ALDITIIAQM EDEFNMSVKD LARNLRGALL 360 KFM* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 190 | 195 | ERKRRE |
2 | 191 | 196 | RKRREK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G211900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205404.1 | 0.0 | transcription factor bHLH18 | ||||
TrEMBL | M5WBF9 | 0.0 | M5WBF9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06603 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF455 | 34 | 164 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-71 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G211900.1.p |
Entrez Gene | 18772533 |