PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G205200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 444aa    MW: 46689 Da    PI: 8.5732
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G205200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3996156262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+++
  Prupe.6G205200.1.p  96 PEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVR 156
                         6899******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-2694148IPR003851Zinc finger, Dof-type
PfamPF027014.5E-3398154IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.506100154IPR003851Zinc finger, Dof-type
PROSITE patternPS013610102138IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MHETNELTTS LPLQKETQAP HHPHKTNQSI IQAPSPAAKQ NINMMSSDNT PPGKPPPGTK  60
DGESLAAGGG GGGGASSRAK PTSSSSSGAK HQHPPPEQAL KCPRCDSPNT KFCYYNNYSL  120
TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKRVRSSSS NSRLSCSLDS KDSAGSSSSE  180
NMMLGGLKFF HGISPAMDFQ LGGLSSLPSR LHHNPSSGIS YNNNNNQFSA FGDVSGTSGL  240
TISTPLDTSA SCNSFLGFNY PLTLGGGGGG GGGGGGDGFS ATQNMMSSMN VHSSLASSIE  300
SLSSINQDLH WKLQQQRLAM LFGSGNDHDQ STQTTQSQLE QQQKTQQIAP ISLFQNLEVS  360
SKADHQHQHQ VVGTHGRREG ASASGDTATE WFFGNSYAPP VTPTPTNSGG GNGGGGGNEN  420
TSNWQHGIQA WSSHDLQQYN ALP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G205200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330036e-36AC133003.3 Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence.
GenBankAP0149596e-36AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126116e-36CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207114.20.0dof zinc finger protein DOF5.7
TrEMBLA0A251NTA50.0A0A251NTA5_PRUPE; Uncharacterized protein
STRINGEMJ083130.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.17e-43Dof family protein