PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G193400.2.p | ||||||||
Common Name | PRUPE_ppa008318mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 337aa MW: 37977.1 Da PI: 4.9818 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.1e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Prupe.6G193400.2.p 57 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 110 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.6 | 6.3e-42 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+d+ +Lk++yd+lk + ++L++e+e+L +e+ Prupe.6G193400.2.p 56 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDFGVLKANYDSLKLNYDNLQHENEALVKEI 146 69***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 k+ Prupe.6G193400.2.p 147 KQ 148 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-19 | 44 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-18 | 55 | 116 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-16 | 57 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.36E-16 | 57 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-19 | 59 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.8E-6 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.8E-6 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.2E-17 | 112 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MKRLGSSDSL GAMISICPST EEQSPRNNHV YRRDFQSMLD GLDEEGCVEE GGHVSEKKRR 60 LSVEQVKALE KNFEVENKLE PERKVKLAQE LGLQPRQVAV WFQNRRARWK TKQLERDFGV 120 LKANYDSLKL NYDNLQHENE ALVKEIKQLK SKLQEENTES NNLSVKEEQM VAKDQSNYKV 180 VDHELSKSPP PPPLGSSVPA TESKELNFES FNNTNNGAVG LEAVSLFPDF KDGSSDSDSS 240 AILNEDNSPN LTISSSGMLQ NHQLMKSPAS TSLKFNCCSS SSPSSSSMNC FQFQKTYHPQ 300 FVKIEEHNFF SSEEACSFFS DEQAPTLQWC CPDQWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 112 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.1420 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00271 | DAP | Transfer from AT2G22430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G193400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB621908 | 4e-98 | AB621908.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH184. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205506.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 isoform X2 | ||||
Swissprot | P46668 | 4e-76 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | M5WIS1 | 0.0 | M5WIS1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06706 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 5e-67 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G193400.2.p |
Entrez Gene | 18772872 |
Publications ? help Back to Top | |||
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