PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G182200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 374aa MW: 41331.3 Da PI: 7.0623 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 179 | 228 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Prupe.6G182200.1.p 179 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 228 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.12E-33 | 178 | 238 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-23 | 179 | 237 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.143 | 179 | 236 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-38 | 179 | 242 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 179 | 237 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 180 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-14 | 180 | 228 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 202 | 218 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MATAIDLYSS SSMTPDLSDS LREDQLMKAL MPFMKSVSST SSLTSISSSI SSPTSPSTSS 60 SFSSYPSYTY HPPLYSTQPN LYPDFCSPST THMFDQVSFE QTGSIGLNQL TPSQILQIQT 120 QMVLQQQQEH QQKEQIAALA SPASLQNQYQ HQNPRTPKFL SPKAIPMKQV GAPSKPTKLY 180 RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGDF ARLNFPHLKH 240 QGAHVSGDFG HYKPLHSSVD AKLQAICQSL AANSAKQGKT GELCSVAERK PAITSPKEVS 300 LKTELKSEWE LTGVECYRPE ISSSPSRSVE SSAGSSSPES DITFLEFSDS QWDEAENFGL 360 EKYPSVEIDW SAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-22 | 178 | 236 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.3327 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G182200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369553 | 0.0 | KT369553.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205497.2 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A251NS90 | 0.0 | A0A251NS90_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06696 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 5e-58 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G182200.1.p |