PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G176300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 28047.7 Da PI: 9.8097 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.7e-18 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEdell ++++q+G g W ++ + g++R++k+c++rw++yl Prupe.6G176300.1.p 11 KGAWTREEDELLRQYIQQHGEGKWQQVSLKAGLNRCRKSCRLRWLNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 30.8 | 6.9e-10 | 66 | 105 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 + ++E +l v++ k+lG++ W++Ia +++ gRt +++k+ w Prupe.6G176300.1.p 66 DFAEDEVDLMVRLRKLLGNR-WSLIAGRLP-GRTSNHVKNCW 105 6778999*************.*********.********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.818 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.37E-27 | 8 | 105 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 8 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.40E-11 | 13 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-18 | 61 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-7 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.859 | 63 | 113 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-7 | 65 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.55E-4 | 69 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEGNNLLRVR KGAWTREEDE LLRQYIQQHG EGKWQQVSLK AGLNRCRKSC RLRWLNYLRP 60 NIKTGDFAED EVDLMVRLRK LLGNRWSLIA GRLPGRTSNH VKNCWSTRLR KNMSSGAEKD 120 KTLETTKTII LRPQPRTFSK KPNCLSSPAP TLQHIQLQEN FNWPLPSSPP IENGIDEWKS 180 QLADTNSVER AVCSGFQLEE DFFTNFWVEN IAQNKGTGVN SADEGLLSNS DFSFHLWNFS 240 KEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-20 | 11 | 113 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G176300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF999987 | 0.0 | KF999987.1 Prunus persica putative MYB106 mRNA, complete cds. | |||
GenBank | KP772286 | 0.0 | KP772286.1 Prunus cerasifera MYB10.6 transcription factor (MYB10.6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422250.1 | 1e-180 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 2e-52 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A0K1TPI6 | 1e-179 | A0A0K1TPI6_9ROSA; MYB10.6 transcription factor | ||||
TrEMBL | W8QG90 | 1e-179 | W8QG90_PRUPE; Putative MYB106 | ||||
STRING | XP_008240567.1 | 1e-167 | (Prunus mume) | ||||
STRING | XP_008245868.1 | 1e-167 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-54 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G176300.1.p |
Publications ? help Back to Top | |||
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