PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G175100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-YB | ||||||||
Protein Properties | Length: 314aa MW: 34884.6 Da PI: 9.7823 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 174.1 | 1.5e-54 | 109 | 204 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 +eqd+flPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkc rekrktingddllwa++tlGfe+yv plk yl+kyre Prupe.6G175100.1.p 109 KEQDKFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCLREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNKYRE 199 89***************************************************************************************** PP NF-YB 93 legek 97 +egek Prupe.6G175100.1.p 200 TEGEK 204 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-54 | 106 | 237 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.38E-40 | 111 | 234 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-26 | 114 | 178 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.1E-18 | 142 | 160 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 145 | 161 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.1E-18 | 161 | 179 | No hit | No description |
PRINTS | PR00615 | 5.1E-18 | 180 | 198 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSARVSEPLN LHPTTNSSGT AQPEAKGEKK KKKVFQRTAQ ARAQDSTTNT QHKKEKGRKR 60 KTSTHFPSLA FPFSISHNHS ELNSMSGRRN QTSPVGSPLS GNVSDGSSKE QDKFLPIANV 120 SRIMKKSLPA NAKISKEAKE TVQECVSEFI SFITGEASDK CLREKRKTIN GDDLLWAMTT 180 LGFENYVGPL KGYLNKYRET EGEKNSMTRQ EEDPSQQQQQ HLNTSNTNMQ HSSNNEQMNT 240 VLNANNISMS TSKVDLFNGG FYFLEGQQQQ QEVTQNYNLV SAGAYNLSRI NESGDVNGNR 300 DLATHHLHNG IGW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-40 | 109 | 199 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-40 | 109 | 199 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G175100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422367.1 | 1e-172 | nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A251NRW7 | 0.0 | A0A251NRW7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ07084 | 1e-153 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 1e-61 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G175100.1.p |