PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G165700.1.p | ||||||||
Common Name | PRUPE_ppa006595mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 405aa MW: 43314.9 Da PI: 7.6348 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.9e-20 | 193 | 242 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f tae Aa+a+++a+++++g Prupe.6G165700.1.p 193 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFETAEAAAQAYDEAALRFRG 242 7********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 193 | 251 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.409 | 193 | 250 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-13 | 193 | 242 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-22 | 193 | 251 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.8E-35 | 193 | 256 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 194 | 205 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.94E-15 | 201 | 252 | No hit | No description |
PRINTS | PR00367 | 3.0E-11 | 216 | 232 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MCVLKVAEKD QRAARHSNIG TEHSIEEWLY EPLVFSQQLR QRQRQRGGGS GGGGGGSEIL 60 ASAGSSMLLR LDREREMSAM VSALAHVVAG DEELAAAESS LVTNRQSEDV GGGLISSSVG 120 GSDSGTKRGR EEEEGGGGQS VTRLCRAFGE FPEQSSSPVL GEGSSKTPPT QTAFPPSTFV 180 YSATQIAEPI RRRYRGVRQR PWGKWAAEIR DPFKAARVWL GTFETAEAAA QAYDEAALRF 240 RGNKAKLNFP ENVRLRTPIA DSPVTQLTNS APPNTLLSVA TSTEPIVHSQ AFQSMQHSSH 300 EASRNLLGYC KPVDVQRQQP MSLYDQMLLS SSATPSVSSS SSSPLASSVS SSSSSPPPPA 360 FSSLFWTQSS LPLRPATGDQ NSTAADFQSP QWSSSSHYSA PFSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-23 | 192 | 253 | 4 | 66 | ATERF1 |
3gcc_A | 9e-23 | 192 | 253 | 4 | 66 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G165700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369558 | 0.0 | KT369558.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 26 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007221228.1 | 0.0 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | M5X8N3 | 0.0 | M5X8N3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22427 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-27 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G165700.1.p |
Entrez Gene | 18787760 |