PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G130500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 157aa    MW: 17242.6 Da    PI: 9.1099
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G130500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB42.22e-13897588
               NF-YB  5 drflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88
                         ++lP a v r++k  l + +k      + k+a     e +  fi ++++ a+d c+++kr+ti++dd+l al ++ f ++++pl++ lk
  Prupe.6G130500.1.p  8 AEELPKAIVRRVVKDKLSQCSKgdgdltLHKEALLAFSESARIFIHYLSATANDICKEKKRQTISADDVLKALEEIEFSEFIKPLEASLK 97
                        5789************9987773344335677777889***********************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-297147IPR009072Histone-fold
PfamPF008083.3E-101080IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.14E-2311138IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MAKVVAEAEE LPKAIVRRVV KDKLSQCSKG DGDLTLHKEA LLAFSESARI FIHYLSATAN  60
DICKEKKRQT ISADDVLKAL EEIEFSEFIK PLEASLKGKN PGKNAEKSGG KNAGKQKAGT  120
SKAKEVKKKR KLEEPSSRKL KEKEEDNQDE NGSDDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131KKKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G130500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421176.11e-107DNA polymerase epsilon subunit 3
TrEMBLA0A251NPS11e-106A0A251NPS1_PRUPE; Uncharacterized protein
STRINGXP_008228666.11e-104(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.14e-42nuclear factor Y, subunit B11