PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G109200.1.p
Common NamePRUPE_ppa007823mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 367aa    MW: 41292.9 Da    PI: 7.7137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G109200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-151462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
  Prupe.6G109200.1.p 14 KGPWSPEEDSKLKEYIEKQGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding39.11.7e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  Prupe.6G109200.1.p  69 GEFSDEEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.941962IPR017930Myb domain
SuperFamilySSF466891.22E-2611109IPR009057Homeodomain-like
SMARTSM007171.4E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-241569IPR009057Homeodomain-like
CDDcd001671.18E-81662No hitNo description
PROSITE profilePS5129422.47963117IPR017930Myb domain
SMARTSM007174.0E-1267115IPR001005SANT/Myb domain
PfamPF002493.2E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2370117IPR009057Homeodomain-like
CDDcd001671.04E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KQGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
HMAPPSHHHH HHQRNSLKPP PFPSSSHHNY QNQPLIPSQP LSSLFKDLGS TYNRSFSSGF  180
EIPHLSMTSN NFSNTTTNSS LFPTQECLVG SMQYNNYPVK KNSNQNNLLM FGSEGSCSTS  240
SDGSCNQISY ERESNIKQEE MVFQSFDQDP NNQRFMMLNY GNNNSGCSTG SAGHDHHHVI  300
NQWCERPDGF DPLAAENTLG YCDLEDVKQL ISGGNNLNNC VNGSKSNSLF SNVDENKTEE  360
KVMYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G109200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744720.0DQ074472.1 Malus x domestica MYB24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422266.10.0transcription factor RAX2
TrEMBLA0A251NNI90.0A0A251NNI9_PRUPE; Uncharacterized protein
STRINGXP_008226382.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36