PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G106200.8.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 556aa    MW: 63441.8 Da    PI: 8.6083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G106200.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08361409348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +l+++v q G g+W++  r +     +Rt+ ++k++w+++l
  Prupe.6G106200.8.p 361 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 409
                         6***********************888887*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.187354413IPR017930Myb domain
SMARTSM007171.5E-9358411IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-12361410IPR009057Homeodomain-like
SuperFamilySSF466891.72E-14361415IPR009057Homeodomain-like
PfamPF002496.2E-7361409IPR001005SANT/Myb domain
CDDcd116601.16E-16362410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MLRMFQGTDN AVCHGRISLP TCQEYLWEAK HSDKVFKSEG GPDSCLQNAG LESHSPGVYK  60
EYCGAEMSDL SCESTPRLGY KDNRSSLLLD HMSVQERQLV FRNMFRYETP VIDKQWPKHS  120
ISPGLQNFFG LESGSNLAEC GLMTTKNEVK TVLSSSIEFF GKDTGTIKGS LSDEGMSRDL  180
QVKWKKLADL ESLKTSNSRV SEIELCSSDE RDKAGAFAMQ KRSRRPPRRY IEELAESKSK  240
FYSRKCGVAC KRSKNSFLHV RSDKNNRQKE TQEETLLCQD KSYEVGCIQV PFGLPVEAGQ  300
LEEHNSSLNS EDCKDHRLLR SSEKLEIEYS PAKSREEISD DECVLRRSTQ KDSKQIKHYT  360
SWTSSEVMKL IEGVSQCGVG RWSAMKRLLF SSCSHRTAVD IKDKWRNLLK ASCTQLQKER  420
KIKRDISKQA SDHVPESVLQ RVRELAVIYP YPRRKRIFSK IPRYRDRTGQ LQCLESTFCI  480
QGICCNNNSE DCKDHRLLGS SEKLEIEYSP AKSREEISED ESVSRINTRK GSKQTKLYTS  540
WTSSQVMKLI EGQMA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G106200.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423142.10.0uncharacterized protein LOC18772343 isoform X2
TrEMBLA0A251NNG20.0A0A251NNG2_PRUPE; Uncharacterized protein
STRINGXP_008226083.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.21e-23TRF-like 3