PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G106200.14.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 535aa MW: 61044 Da PI: 8.472 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 361 | 409 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +l+++v q G g+W++ r + +Rt+ ++k++w+++l Prupe.6G106200.14.p 361 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 409 6***********************888887*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.187 | 354 | 413 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-9 | 358 | 411 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-12 | 361 | 410 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-14 | 361 | 415 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-7 | 361 | 409 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 8.93E-17 | 362 | 410 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MLRMFQGTDN AVCHGRISLP TCQEYLWEAK HSDKVFKSEG GPDSCLQNAG LESHSPGVYK 60 EYCGAEMSDL SCESTPRLGY KDNRSSLLLD HMSVQERQLV FRNMFRYETP VIDKQWPKHS 120 ISPGLQNFFG LESGSNLAEC GLMTTKNEVK TVLSSSIEFF GKDTGTIKGS LSDEGMSRDL 180 QVKWKKLADL ESLKTSNSRV SEIELCSSDE RDKAGAFAMQ KRSRRPPRRY IEELAESKSK 240 FYSRKCGVAC KRSKNSFLHV RSDKNNRQKE TQEETLLCQD KSYEVGCIQV PFGLPVEAGQ 300 LEEHNSSLNS EDCKDHRLLR SSEKLEIEYS PAKSREEISD DECVLRRSTQ KDSKQIKHYT 360 SWTSSEVMKL IEGVSQCGVG RWSAMKRLLF SSCSHRTAVD IKDKWRNLLK ASCTQLQKER 420 KIKRDISKQA SDHVPESVLQ RVRELAVIYP YPRRKRIFSK IPRYRDRTGQ LQCLESTFCI 480 QGICCNNNSE DCKDHRLLGS SEKLEIEYSP AKSREEISED ESVSRINTRK GQMA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G106200.14.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423142.1 | 0.0 | uncharacterized protein LOC18772343 isoform X2 | ||||
TrEMBL | A0A251NNA8 | 0.0 | A0A251NNA8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008226083.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.2 | 1e-23 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G106200.14.p |