PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G098800.1.p | ||||||||
Common Name | PRUPE_ppa004548mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | C2H2 | ||||||||
Protein Properties | Length: 506aa MW: 55580.9 Da PI: 9.1338 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Prupe.6G098800.1.p 66 FVCEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00068 | 143 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Prupe.6G098800.1.p 143 WKCEKCSKKYAVQSDWKAHSKVC 165 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.7E-7 | 65 | 88 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.1E-5 | 66 | 88 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 108 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 131 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.7E-7 | 138 | 163 | No hit | No description |
SMART | SM00355 | 140 | 143 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MMSEDGLSIP STIKGLAQEL SSSPNPNPNT DNQLKRKRNL PGTPGKYPDA EVIALSPKSL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PERTCVHHEP 120 SRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HSKVCGTREY RCDCGTLFSR 180 KDSFITHRAF CDALAAEESA RFGSASTTNM NPSFINGCNN ITNINPHHQP PRIPHFIPMF 240 QQEFAGSDPA AANNSHLNSN AFMPELVATA SMDMFGSSSS SQTQWLINNT KFPEEASFNL 300 SMSSSSLARG LKEELEESKG SLSGTISASA TSFYNNNNHQ HQPMSATALL QKAAQMGSTR 360 SSNNNNNNNN NPATTFNDTA FGFMSTSSNS SHNMSNQLSS YGHHHNKNEV ESFNDLVNSM 420 SSSTPATTIR DGSLFSSSFL SNKHLMNMPG AANLIKQSQS EQSSLTRDFL GVGGDAISGV 480 PFFQQELAKL ASMGDLSQYT SSGHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 139 | 209 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 139 | 209 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 105 | KLKQRSNKEVIRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, especially in vascular initials, cortex, endodermis, and quiescent center (QC). {ECO:0000269|PubMed:25829440}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G098800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422414.1 | 0.0 | protein indeterminate-domain 9 | ||||
Swissprot | Q944L3 | 1e-114 | IDD9_ARATH; Zinc finger protein BALDIBIS | ||||
TrEMBL | A0A251NMS5 | 0.0 | A0A251NMS5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ08565 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 2e-99 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G098800.1.p |
Entrez Gene | 18774826 |
Publications ? help Back to Top | |||
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