PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G097700.2.p | ||||||||
Common Name | PRUPE_ppa001557mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ARF | ||||||||
Protein Properties | Length: 802aa MW: 88533.6 Da PI: 6.2447 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.7e-23 | 167 | 268 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F Prupe.6G097700.2.p 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVLFL-- 254 99****************************963.3445679************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+++++r+ Prupe.6G097700.2.p 255 RGENGELRLGIRRA 268 4499999****996 PP | |||||||
2 | Auxin_resp | 110.9 | 1.3e-36 | 294 | 372 | 2 | 82 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v+ G+Rfkm+f+ +ds+er+ G+v+g+sdldp+ WpnSkWr+L Prupe.6G097700.2.p 294 ANAISTKSMFHVFYSPRASHAEFVIPYQKYVRSIANPVTTGTRFKMRFDRDDSPERS--GVVTGISDLDPYGWPNSKWRCL 372 789*****************************************************9..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-44 | 159 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-40 | 160 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.36E-22 | 165 | 267 | No hit | No description |
PROSITE profile | PS50863 | 12.83 | 167 | 269 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-21 | 167 | 268 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-23 | 167 | 269 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-30 | 294 | 372 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 7.19E-10 | 672 | 752 | No hit | No description |
PROSITE profile | PS51745 | 21.263 | 673 | 757 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
MEIDLNHAVT EVEKSAYCNG DCDKVGGGCV YCLSSSTSSS SSNSSSAPVA SSIYLELWHA 60 CAGPLISLPK KGNAVVYFPQ GHLEQVASSS PFSSMEMPTF DLQPQIFCKV VNVQLLANKE 120 NDEVYTHVTL LPQPELVGTN LDGKELQELG VDEGDGGSPT KSTPHMFCKT LTASDTSTHG 180 GFSVPRRAAE DCFPPLDYKQ QRPSQELVAK DLHGVEWRFR HIYRGQPRRH LLTTGWSIFI 240 SQKNLVSGDA VLFLRGENGE LRLGIRRAVR PRNGLPDSIV GNQNSYPSVL SLLANAISTK 300 SMFHVFYSPR ASHAEFVIPY QKYVRSIANP VTTGTRFKMR FDRDDSPERS GVVTGISDLD 360 PYGWPNSKWR CLMVRWDEDI GNDHQERVSL WEIDPSVSLP PLSIQSSPRL MKKLRTSLQT 420 TPPNNSITAG GGGFMDFEES VKSSKVLQGQ ENIGFISPLY GCDTVNRPQD FEMQAPAHPS 480 LALNATQKAT IGELMRARHS TYTGFAESDR FPKVLQGQEI CPLRSLTGKA NFTLGDWESN 540 LGCTSYNIYQ APKPNFFSLA SESLPNIYFP YGDIRRAGQD PVMCSNATNL PRENMKINPY 600 SMQMGVARNE VGRPNKPSEH KPQESSSAPP TLVQNPRNPN DEDFNGTVTG CKLFGFSLTG 660 ENPTPNSQSS SKRSCTKVHK QGSLVGRAID LSKLNGYGDL LSELERLFSM EGLLRDSDKG 720 WRILYTDSEN DVMVVGDDPW HEFCNVVSKI HIYTQEEVEK MTIGMISDDT QSCLEQAPVM 780 LEMSKSSSVS QPDSSPTVIR V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-120 | 39 | 395 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-120 | 39 | 395 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G097700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420730.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A251NMR1 | 0.0 | A0A251NMR1_PRUPE; Auxin response factor | ||||
STRING | EMJ06142 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G097700.2.p |
Entrez Gene | 18772269 |