PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G091100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 330aa    MW: 36471.2 Da    PI: 6.0751
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G091100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-17154203155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Prupe.6G091100.2.p 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                         78*******************......55************************997 PP
2AP240.85.4e-13246296155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Prupe.6G091100.2.p 246 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 296
                         79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-15154212IPR016177DNA-binding domain
PfamPF008473.2E-9154203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-16155211IPR001471AP2/ERF domain
PROSITE profilePS5103217.385155211IPR001471AP2/ERF domain
SMARTSM003808.1E-31155217IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17246305IPR016177DNA-binding domain
CDDcd000181.86E-25246306No hitNo description
PfamPF008471.2E-8246296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-16247304IPR001471AP2/ERF domain
SMARTSM003805.1E-32247310IPR001471AP2/ERF domain
PROSITE profilePS5103215.554247304IPR001471AP2/ERF domain
PRINTSPR003672.7E-6248259IPR001471AP2/ERF domain
PRINTSPR003672.7E-6286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MLDLNLNVVG SGPNDVESCG TQMDESGTSN SSVVNADASS TNDDSCSTRA ARYDAVTTFN  60
FDILKVRGGE DEEDDVVVTK ELFPVTGGLS NWPGQGQSSA SSSLVRKNLM ELGFDHGGTG  120
EVRLVQQKQQ QPAAPPPQQQ QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVDADINY NLSDYEEDLK QMKNLTKEEF VHILRRQSTG  240
FSRGSSRYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKCNGREAV  300
TNFEPSTYEG EMISEAGNED GAQCKCNDE*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in developing branch and spikelet meristems at very early stages of inflorescence formation, and is maintained uniformly in the spikelet meristems until floral organs initiation. Present in some floral organ primordia. {ECO:0000269|PubMed:22003982}.
UniprotTISSUE SPECIFICITY: Highly expressed in developing panicles and in young seedlings (PubMed:20017947, PubMed:22003982). Present at low levels at all developmental stages (PubMed:22003982). {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G091100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844370.0KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422219.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AMA91e-103AP22_ORYSI; APETALA2-like protein 2
SwissprotB8AXC31e-102AP21_ORYSI; APETALA2-like protein 1
SwissprotQ84TB51e-103AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A251NMH90.0A0A251NMH9_PRUPE; Uncharacterized protein
STRINGXP_008224974.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-105related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]