PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G091100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | AP2 | ||||||||
Protein Properties | Length: 480aa MW: 52458.1 Da PI: 6.6992 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 154 | 203 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Prupe.6G091100.1.p 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.1 | 9.3e-13 | 246 | 296 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g Prupe.6G091100.1.p 246 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 296 79********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-9 | 154 | 203 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-15 | 154 | 212 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.385 | 155 | 211 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-16 | 155 | 211 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-31 | 155 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-16 | 246 | 305 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-8 | 246 | 296 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-25 | 246 | 306 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-15 | 247 | 304 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-32 | 247 | 310 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.554 | 247 | 304 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 248 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 286 | 306 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MLDLNLNVVG SGPNDVESCG TQMDESGTSN SSVVNADASS TNDDSCSTRA ARYDAVTTFN 60 FDILKVRGGE DEEDDVVVTK ELFPVTGGLS NWPGQGQSSA SSSLVRKNLM ELGFDHGGTG 120 EVRLVQQKQQ QPAAPPPQQQ QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY 180 LGGFDTAHAA ARAYDRAAIK FRGVDADINY NLSDYEEDLK QMKNLTKEEF VHILRRQSTG 240 FSRGSSRYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKCNGREAV 300 TNFEPSTYEG EMISEAGNED GDHNLDLNLG ISPPSFGNCQ KEVEGHLQFH SGPYDGHNGK 360 RMEHNVNATM SDPPFKGLVM TSQHPPLWNG VYPSCFSNQE RATEKRIALG SQGPPNWAWQ 420 MHGQVSATPM PLFSTAASSG FSFSATTPPA AVHPLQPSTP TALNLCFTSP ATAAANTSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G091100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP784437 | 0.0 | KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422219.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | Q9SK03 | 1e-116 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A251NP60 | 0.0 | A0A251NP60_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224974.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-117 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G091100.1.p |