PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G088900.2.p | ||||||||
Common Name | PRUPE_ppa019793mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 250aa MW: 28667.4 Da PI: 8.9079 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.2e-20 | 9 | 68 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Prupe.6G088900.2.p 9 SRWCPTPEQLMILEEMYRAgIRTPNASQIQHITAQLslygKIEGKNVFYWFQNHKARDRQ 68 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 119 | 2.1e-38 | 7 | 69 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+PtpeQ++iLee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk Prupe.6G088900.2.p 7 SSSRWCPTPEQLMILEEMYRAGIRTPNASQIQHITAQLSLYGKIEGKNVFYWFQNHKARDRQK 69 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.398 | 4 | 69 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-7 | 6 | 73 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-11 | 9 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-18 | 9 | 68 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-8 | 9 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.15E-5 | 10 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSPAANSSSR WCPTPEQLMI LEEMYRAGIR TPNASQIQHI TAQLSLYGKI EGKNVFYWFQ 60 NHKARDRQKL RRKLCKQLQQ QQLLYNHHHN YHNYHNNPYH HHHHHQQQQQ QQQSLLGYLD 120 HLSPPASSSA LQQLSNCHNY SSAGFLPPPQ VGVEDALMNQ AWKMEIPQRV EMEKSVMSMY 180 GRDWMMMMMM EDVGPPSPCC STSTRATTTR QPLKTLQLFP ITATNLKEES SSPSSSNPLS 240 PPTTPTPNY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G088900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208702.2 | 0.0 | WUSCHEL-related homeobox 3 isoform X1 | ||||
TrEMBL | M5W9A3 | 0.0 | M5W9A3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09901 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-42 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G088900.2.p |
Entrez Gene | 18773558 |