PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G085000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 262aa    MW: 29848.4 Da    PI: 6.8973
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G085000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-161158148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed  lv+ v ++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Prupe.6G085000.1.p 11 KGPWTEQEDFNLVCFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 58
                        79********************************************97 PP
2Myb_DNA-binding54.62.6e-1764109148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  Prupe.6G085000.1.p  64 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 109
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.975658IPR017930Myb domain
SuperFamilySSF466891.91E-298105IPR009057Homeodomain-like
SMARTSM007171.8E-141060IPR001005SANT/Myb domain
PfamPF002494.3E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-191265IPR009057Homeodomain-like
CDDcd001679.29E-101358No hitNo description
PROSITE profilePS5129427.33459113IPR017930Myb domain
SMARTSM007177.6E-1763111IPR001005SANT/Myb domain
PfamPF002491.0E-1564108IPR001005SANT/Myb domain
CDDcd001672.06E-1166109No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2466112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MKMVQEENIR KGPWTEQEDF NLVCFVGLFG DRRWDFIAKV SGLNRTGKSC RLRWVNYLHP  60
GLKRGKMTPQ EERLVLELHS KWGNRWSRIA RKLPGRTDNE IKNYWRTHMR KKAQEKKRAA  120
SPSSSSSNCS SSSNITSTEG GASFYDTGGL EIKASSGAKK TGGDHQEQED DKKRDQKEYS  180
LDDIWKDINL PEVNSIEPVY NGYSEEACNI ISCPLMASPA PWEYCSDSLW EMDEEESKMF  240
LPTTSDQFLS CFEYGKASLI G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-28111134105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-271111358159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-271111358159MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-28111134105C-Myb DNA-Binding Domain
1msf_C8e-28111134105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G085000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206263.20.0transcription factor MYB59
SwissprotQ9LX821e-99MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A251NPS60.0A0A251NPS6_PRUPE; Uncharacterized protein
STRINGXP_008222863.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-98myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]