PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G080100.1.p | ||||||||
Common Name | PRUPE_ppa021063mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 227aa MW: 25297.2 Da PI: 8.5533 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.8 | 5.1e-15 | 2 | 49 | 15 | 57 |
HHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 15 LeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 Le+++++ r+psae++++L+++l +++ ++V++WFqN++a++++ Prupe.6G080100.1.p 2 LENFYRQgIRTPSAEQIQQLTSRLraygHIEGKNVFYWFQNHKARQRQ 49 999***99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 85.8 | 4.8e-28 | 1 | 51 | 15 | 65 |
Wus_type_Homeobox 15 iLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +Le+ y++G+rtP++e+iq++t++L++yG+ie+kNVfyWFQN+kaR+rqkq Prupe.6G080100.1.p 1 MLENFYRQGIRTPSAEQIQQLTSRLRAYGHIEGKNVFYWFQNHKARQRQKQ 51 69***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.803 | 1 | 50 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-5 | 1 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.53E-9 | 2 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.80E-4 | 2 | 51 | No hit | No description |
Pfam | PF00046 | 1.0E-12 | 2 | 49 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MLENFYRQGI RTPSAEQIQQ LTSRLRAYGH IEGKNVFYWF QNHKARQRQK QKQESVAYLN 60 PFFHMTSQSM FPPPPPPLNH HPCPNVMCSP YYIPVQNELG FYQQSPYPYK VPFPGGAKGK 120 PRTEKSVKPR TTHTGGSGYE PMPHGYSTSG GGYMINDVAN ESTGRCDQET LPLFPLQPTG 180 ILQGREYQNP SCGSGTANYA DNSTAALIGS NSEIVGDQPF YDFFSG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G080100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007207641.1 | 1e-169 | WUSCHEL-related homeobox 2 | ||||
TrEMBL | M5WPU9 | 1e-167 | M5WPU9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ08840 | 1e-168 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59340.1 | 7e-42 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G080100.1.p |
Entrez Gene | 18773476 |