PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G074000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 666aa    MW: 74774.8 Da    PI: 6.4085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G074000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.29.1e-1192906601373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+avs++d + a++lL+++++++sp gd  qRla++f+++L+arla++++++y al++++ts    ++ l+a+++++ ++P+ 
  Prupe.6G074000.1.p 290 LRTLLILCAQAVSADDRRTANELLKQIRQHSSPFGDGSQRLAHCFANGLEARLAGTGTQIYTALSSKRTS---AADMLKAYQTYVAACPFT 377
                         5789************************************************************999999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k++ + aN++I + +e++e++HiiDf+i +G+QWpaL++ L+ R++gpp+lRiTg++ p+sg   +e+++etg+rLak++e+ +vpfe+++
  Prupe.6G074000.1.p 378 KVAIIFANHMISKLAEKAETLHIIDFGILYGFQWPALIHCLSRRAGGPPKLRITGIELPQSGfrPEERVQETGHRLAKYCERYNVPFEYTA 468
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +ak++e++++eeL+vk++E+laVn+ ++ ++llde+v+++s+rd+vL+++++++P+++v+   + ++ ++ F++rf eal ++salfd++
  Prupe.6G074000.1.p 469 -IAKKWETIQIEELKVKRDEVLAVNCLFRFKNLLDETVAVNSPRDAVLNVIRRMNPDIFVHGIINGSYHAPFFVTRFREALFHFSALFDMF 558
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpre+  r + E+e+lgre+vn +aceg+er+ r et+++W+ r ++aGFk++pl+ + +++ ++ ++  + + + v+e+ +++++gW
  Prupe.6G074000.1.p 559 DTNLPREDPMRLMFEEEFLGREVVNTIACEGSERVVRPETYKQWQVRNMRAGFKQLPLDRELMNKLRMKVKLGYHRDFVVDEDGNWMLQGW 649
                         **************************************************************************999************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r ++  S+W
  Prupe.6G074000.1.p 650 KGRIIYCSSCW 660
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.058264641IPR005202Transcription factor GRAS
PfamPF035143.1E-116290660IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEEDMVTKPC MFHDPLAVQA AEKSLYEVLG EKYPPSPDQH PLNIESPDCP FSVTFSDFSA  60
INSSSSSTSH SVDSRWSNAD VIENKPSILE TPIPDNFVFQ STSKPRSQLS SNGNGNGNGL  120
VGSYMSELMV SNLFSESELV LQFNRGVEEA SKFLPRGQLI VDVENNKPYT VASGKAEDVV  180
VKTEKDDIEL LATSSRGKKS HEREDTDLED GRSNKQSAVY LEDTEAELSE IFDKVLLCGG  240
GKAEPFVCGG EEVRQDEANK ALQQNGQSVG TGNGKTRAKK KGDKKEVVDL RTLLILCAQA  300
VSADDRRTAN ELLKQIRQHS SPFGDGSQRL AHCFANGLEA RLAGTGTQIY TALSSKRTSA  360
ADMLKAYQTY VAACPFTKVA IIFANHMISK LAEKAETLHI IDFGILYGFQ WPALIHCLSR  420
RAGGPPKLRI TGIELPQSGF RPEERVQETG HRLAKYCERY NVPFEYTAIA KKWETIQIEE  480
LKVKRDEVLA VNCLFRFKNL LDETVAVNSP RDAVLNVIRR MNPDIFVHGI INGSYHAPFF  540
VTRFREALFH FSALFDMFDT NLPREDPMRL MFEEEFLGRE VVNTIACEGS ERVVRPETYK  600
QWQVRNMRAG FKQLPLDREL MNKLRMKVKL GYHRDFVVDE DGNWMLQGWK GRIIYCSSCW  660
VPSRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5629766226380Protein SCARECROW
5b3h_A2e-5629766225379Protein SCARECROW
5b3h_D2e-5629766225379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G074000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420704.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A251NLK00.0A0A251NLK0_PRUPE; Uncharacterized protein
STRINGXP_008223833.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]