PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G073800.1.p
Common NamePRUPE_ppa019574mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 707aa    MW: 79850.6 Da    PI: 5.9183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G073800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.25.7e-1203337042374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+av+s d++ a++lL+++++++sp+gd++qRla+yf+ +L+arla+  +  y+ l + + s    +e l+a+++f+  sP+ +
  Prupe.6G073800.1.p 333 STLLTQCAQAVASYDQRTASELLKQIRQHSSPYGDANQRLAHYFADGLEARLAGARTPSYSFLVSMQIS---AAEILKAYEVFVTSSPFKT 420
                         579***************************************************999999999999998...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         +sh++aN++Il+ +e+++r+H+iDf+is+G+QWp+++q L++Rp+gpp+lRiT+++ p++g   +e++eetg+rL+k+Ae+++vpfe+nv 
  Prupe.6G073800.1.p 421 VSHFLANKTILKLAEKATRLHVIDFGISYGFQWPCFIQHLSKRPGGPPKLRITAIELPQPGfrPTERVEETGRRLKKYAERFNVPFEYNV- 510
                         ************************************************************9****************************9. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a+++e++++e+L+++++E+++Vn++ +l++++de+v ++s+rd vLkl+k+++P+++++   +  +ns+ F++rf eal ++salfd++e
  Prupe.6G073800.1.p 511 IAQKWETIQFEDLKIDRNEVIVVNCMNRLKHMPDETVMVNSPRDIVLKLIKKINPDLFIHGVVNGTYNSPFFVTRFKEALFHFSALFDMFE 601
                         7****************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362
                         a++pre+e r   E+++ gr+i nvvaceg er+er et+++W+ r  +aGFk++pl+++  k +k++l+ ++  + ++++e+ +++++gW
  Prupe.6G073800.1.p 602 ASVPREDERRLLFEKAVYGRDILNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQELLKRVKRMLKFMGyHNDFSIDEDGHWILQGW 692
                         **********************************************************************9999999************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r+++++S+W+
  Prupe.6G073800.1.p 693 KGRTILALSFWK 704
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.503306683IPR005202Transcription factor GRAS
PfamPF035142.0E-117333704IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MDTLLERYYL SMERFNFGHG SASLYSNQNL VNGFQVNQES TSPVHLSTNL DHPSDSSTSL  60
SSGSDGDTVD FSDYNHPVLK YVSDILLEED LEGKTCMLQD CLALQAAEKS FYDVLNQEDP  120
PSPNQLPLSV HQSFENSDDD SPRSCHRSNG SIAPNTDWVF DPSETSNVQS SLVQSLSDAG  180
LVSDSLSEIG HSGGLGEASK FLPNVKLEGN RLMPPGLDQW PSSTNILMTT PDNDGYNSTN  240
GSKGKKNHQR EDADYPEEGR SNKQPVAFAD DSEPQEMFDE VLLCHGNHEF ESCSPDESLI  300
AEGSGKLQRN KQKGSKTARS KKQNNNWELV DLSTLLTQCA QAVASYDQRT ASELLKQIRQ  360
HSSPYGDANQ RLAHYFADGL EARLAGARTP SYSFLVSMQI SAAEILKAYE VFVTSSPFKT  420
VSHFLANKTI LKLAEKATRL HVIDFGISYG FQWPCFIQHL SKRPGGPPKL RITAIELPQP  480
GFRPTERVEE TGRRLKKYAE RFNVPFEYNV IAQKWETIQF EDLKIDRNEV IVVNCMNRLK  540
HMPDETVMVN SPRDIVLKLI KKINPDLFIH GVVNGTYNSP FFVTRFKEAL FHFSALFDMF  600
EASVPREDER RLLFEKAVYG RDILNVVACE GLERVERPET YKQWQVRNVR AGFKQLPLDQ  660
ELLKRVKRML KFMGYHNDFS IDEDGHWILQ GWKGRTILAL SFWKKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-493147031378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.199850.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G073800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208207.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM5W7W50.0M5W7W5_PRUPE; Uncharacterized protein
STRINGEMJ094060.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]