PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G073700.1.p | ||||||||
Common Name | PRUPE_ppa026849mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GRAS | ||||||||
Protein Properties | Length: 692aa MW: 78813.9 Da PI: 6.2244 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 389.4 | 4.1e-119 | 318 | 689 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +lL++cA+av+s +++ a++lL+++++++sp+gd++qRla+yf+ +L+arla+ + y+ l + + s +e l+a+++f+ sP+ + Prupe.6G073700.1.p 318 STLLTQCAQAVASYEQRTASELLKQIRQHSSPYGDATQRLAHYFADGLEARLAGARTPSYSPLISMQIS---AAEILKAYEVFVTSSPFRT 405 579***************************************************989999888888887...8****************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +s+++aN++Il+ +e+++r+H+iDf+is+G+QWp+++q L++Rp+gpp+lRiT+++ p++g +e++eetg+rL+k+Ae+++vpfe+nv Prupe.6G073700.1.p 406 VSNFLANRTILKLAEKATRLHVIDFGISYGFQWPCFIQRLSKRPGGPPKLRITAIELPQPGfrPTEKVEETGRRLKKYAERFNVPFEYNV- 495 ************************************************************9****************************9. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 +a+++e++++e+L+++++E+++Vn++ +l +++de+v ++s+rd vLkl+k+++P+++++ + +ns+ F++rf eal ++salfd +e Prupe.6G073700.1.p 496 IAQKWETIQFEDLKIDRNEMIVVNCMNRLRHIPDETVMVNSPRDIVLKLIKKINPDLFIHGVVNGTYNSPFFVTRFREALFHFSALFDVFE 586 7****************************************************************************************** PP GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgW 362 a++pre+e r + E+++ g++i nvvaceg er+er et+++W+ r +aGFk++pl++++ k+++++l+ ++ + +r++ee +++++gW Prupe.6G073700.1.p 587 ASVPREDERRLMFEKAVYGKDILNVVACEGLERVERPETYKQWQVRNVRAGFKQLPLDQEILKKVERMLKFMGyHNDFRIDEEGHWILQGW 677 **********************************************************************9999999************** PP GRAS 363 kdrpLvsvSaWr 374 k+r+++++S+W+ Prupe.6G073700.1.p 678 KGRTIMALSFWK 689 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.147 | 291 | 668 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-116 | 318 | 689 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MDNLLERYSL SLERFNFGHG LASTNLDHPS DSNTYLSSGS DGDTTDISDY NRPVIKYISD 60 ILLEEDLEGK PCMLQDCLTL QAAEKSFYDV LNQKDPLSPN QPPLSVHQSF ENSDDDSPHS 120 CHNSNASIAA KTNWVFDPSE TSKVQSSLVQ SLPDPGLDSD SLSEMQRLEY FGGLREASKF 180 LPNVKFETID LKGSQLMPPG LDQWPQATNT LMRRPDNDDY SSTNRSKGKK NHQRDDGDYP 240 EEGRSNKQPV AFADDSEPQE MFDEVLLCLG NHEFELCSND ESLITEGSGK LQHKKQSKGS 300 KTAGSKKQNN NRELVDLSTL LTQCAQAVAS YEQRTASELL KQIRQHSSPY GDATQRLAHY 360 FADGLEARLA GARTPSYSPL ISMQISAAEI LKAYEVFVTS SPFRTVSNFL ANRTILKLAE 420 KATRLHVIDF GISYGFQWPC FIQRLSKRPG GPPKLRITAI ELPQPGFRPT EKVEETGRRL 480 KKYAERFNVP FEYNVIAQKW ETIQFEDLKI DRNEMIVVNC MNRLRHIPDE TVMVNSPRDI 540 VLKLIKKINP DLFIHGVVNG TYNSPFFVTR FREALFHFSA LFDVFEASVP REDERRLMFE 600 KAVYGKDILN VVACEGLERV ERPETYKQWQ VRNVRAGFKQ LPLDQEILKK VERMLKFMGY 660 HNDFRIDEEG HWILQGWKGR TIMALSFWKK A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-49 | 306 | 688 | 8 | 378 | Protein SCARECROW |
5b3h_A | 4e-49 | 306 | 688 | 7 | 377 | Protein SCARECROW |
5b3h_D | 4e-49 | 306 | 688 | 7 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.19985 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G073700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422106.1 | 0.0 | scarecrow-like protein 30 | ||||
TrEMBL | A0A251NLI9 | 0.0 | A0A251NLI9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09694 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G073700.1.p |
Entrez Gene | 18774928 |