PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G073400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 718aa    MW: 81656.6 Da    PI: 6.5813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G073400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.41.3e-1173457153374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lL++cA+av+s d++ a++lL+++++++sp+gd+++Rla+yf+ +L+arla++ +  y+ l + +t+    +e l+a++l++  +P+ k+
  Prupe.6G073400.1.p 345 TLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDATERLAHYFADGLEARLAGTRTPSYSPLLSIQTP---AAEILKAYQLYVTHCPFKKM 432
                         69***************************************************999999999888888...8******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                          h+  N++I++ +e+++r+HiiDf+is+G+QWp+++q L++Rp+gpp++R+T+++ p++g   +e++eetg+rL k+A++++vpf+++v +
  Prupe.6G073400.1.p 433 LHFFSNRTIMKLAENATRLHIIDFGISYGFQWPCFIQRLSKRPGGPPNIRMTAIELPQPGfrPTERVEETGRRLDKYAKRFNVPFQYKV-I 522
                         ***********************************************************9****************************9.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         a+++e++++e+L+++++E ++Vn++++l++++de+v  +s+rd+vLkl+k+++P++ ++   +  +ns+ Fl+rf ea+ ++sa fd++ea
  Prupe.6G073400.1.p 523 AQKWETIQFEDLKIDRDELIVVNCMHRLKHIPDETVMASSPRDTVLKLIKRINPDLYIHGVINGAYNSPFFLTRFREAFFHFSAQFDMFEA 613
                         ******************************************************************************************* PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                         ++pre+e+r + E++++g++i+nv+aceg er+er et+++W+ r ++aGFk++pl+++ +k++k++l+ ++  + +r++e+ +++++gWk
  Prupe.6G073400.1.p 614 TIPREDEQRLMFEKAVFGKDIMNVIACEGLERVERPETYKQWQVRYQRAGFKQLPLDQELVKKVKTMLKVMGyHNDFRIDEDGHWMLQGWK 704
                         **********************************************************************999999*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r ++ + +W+
  Prupe.6G073400.1.p 705 GRIIMGLAFWK 715
                         **********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.513317694IPR005202Transcription factor GRAS
PfamPF035144.6E-115345715IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MDTLLERLSV SKEKFHFGHG SIPVHSNQNL VNGFQVNHEP TNPPFLPTNS DHPSDSSTSL  60
SSGSDGDTFD ISDCSQPVLK YISDILLEED LEGKPCMLQD CLALQAAEKS FYDVLNQKDP  120
PSPNQPPLSD HQSFENSDDD STHSCHRSND YRAEKTDWVF DSSETSHVQS DSSETSHVQS  180
SLVESPSDTL LASDSLDGNF GGVGEARKLL PNENFGIIDL EKYQFMSQGP NTLFRNLASK  240
TENDGYNSTN RSKEKKNHQR EDGDYAEEGR SNKQSAASAD DSEPQEMFDK VLLCSVNHES  300
KSCSHDEPLK NEGSGKLKPN KQSKGSKTAR SKKQNNKREV VDFSTLLTQC AQAVASYDQR  360
TASELLKQIR KHSSPYGDAT ERLAHYFADG LEARLAGTRT PSYSPLLSIQ TPAAEILKAY  420
QLYVTHCPFK KMLHFFSNRT IMKLAENATR LHIIDFGISY GFQWPCFIQR LSKRPGGPPN  480
IRMTAIELPQ PGFRPTERVE ETGRRLDKYA KRFNVPFQYK VIAQKWETIQ FEDLKIDRDE  540
LIVVNCMHRL KHIPDETVMA SSPRDTVLKL IKRINPDLYI HGVINGAYNS PFFLTRFREA  600
FFHFSAQFDM FEATIPREDE QRLMFEKAVF GKDIMNVIAC EGLERVERPE TYKQWQVRYQ  660
RAGFKQLPLD QELVKKVKTM LKVMGYHNDF RIDEDGHWML QGWKGRIIMG LAFWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-493257161380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.135040.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G073400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421821.10.0scarecrow-like protein 14
TrEMBLA0A251NLM50.0A0A251NLM5_PRUPE; Uncharacterized protein
STRINGXP_008222405.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14