PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G064700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 705aa MW: 77761.3 Da PI: 10.1648 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.8 | 1.3e-13 | 643 | 695 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ g++ AeIrdp + rkr+slg + t eeAa a++ a+++++g Prupe.6G064700.2.p 643 HYRGVRQRR-FGKFTAEIRDPA--KkvSRKRVSLGCYETSEEAALAYDSAAQRIHG 695 7*****999.9*********84..34335*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.6E-23 | 642 | 703 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-16 | 643 | 703 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-10 | 643 | 695 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.968 | 643 | 703 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-22 | 643 | 704 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.01E-23 | 643 | 704 | No hit | No description |
PRINTS | PR00367 | 2.6E-9 | 644 | 655 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 685 | 704 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MHMAGSSGCA FGNSPVVCNR CGIQIVLRQA QEHAQNCPGV HPQAQQADGA LDTSASGTSA 60 TADQTQAATQ SGVAMSQVQI FQITIVTPPG SDPDQEANSS SQAVVQAAVQ TAEQWYQHQQ 120 QYQQYYQAAV QQSQQRHLQS HPPYGTVQHQ PRAYLQSRPQ TQPSLRAQLS QSQAQPKPQI 180 QPPHVQVPVA SQTQNQAQVN KQQQLRPAVQ TYPAARRQPL PQPQYFQAPS HSQPHPQHVQ 240 MPHNQQAQIQ QHTHSKIHPQ HHPISLPQPH SQPQPHPQLQ RLPQPHPQLH PSQPMNTTVQ 300 PQTQHPSSHA VTGNHLYPQP HLHQPVQSGA PQQRTMDMQS HGVPHSQSQT PVQIQSQPPQ 360 QPPVMRLPPS HIPNQQQPAL LPSPGQIRNI NPAQQQPVHS YAQQPGNTVQ QRPLMHAVQR 420 SIPRQYLHHQ PYVQQQPPTQ LHPRGQSHSF PLHVHAYTQS QRNIALSQGI QLSQSNLGGS 480 RRPMMPIHGV QSQTSVQTAG GLHMRPVHPT VNLPSTNHSN MVRTKNLVQS GASWRPTTSE 540 RHAEEESESS AQQIAKNVTH DVGTASAVVG DAEVKTVKSD MDMKSIDNEN KPTGEDKTNH 600 GDTSSKEIPD IHALENGESV SQSMLNAADQ NKVRKSGVAR GRHYRGVRQR RFGKFTAEIR 660 DPAKKVSRKR VSLGCYETSE EAALAYDSAA QRIHGSKALL NFPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-22 | 639 | 704 | 1 | 64 | ATERF1 |
3gcc_A | 4e-22 | 639 | 704 | 1 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.13422 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G064700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369533 | 0.0 | KT369533.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423112.1 | 0.0 | chromatin modification-related protein eaf-1 | ||||
TrEMBL | A0A251NL81 | 0.0 | A0A251NL81_PRUPE; Uncharacterized protein | ||||
STRING | XP_008220086.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 8e-15 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G064700.2.p |