PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G059700.1.p
Common NamePRUPE_ppa018123mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 473aa    MW: 52487.7 Da    PI: 7.5769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G059700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-17126172148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  Prupe.6G059700.1.p 126 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 172
                         799*****************************.*************97 PP
2Myb_DNA-binding58.41.6e-18178220145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++WT+eE+ +lvda+++ G++ W+ Ia++++ gRt++ +k++w+
  Prupe.6G059700.1.p 178 KDSWTEEEETILVDAHTEVGNR-WAEIAKRIP-GRTENAIKNHWN 220
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.073121176IPR017930Myb domain
SuperFamilySSF466893.95E-30124219IPR009057Homeodomain-like
SMARTSM007173.1E-17125174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-28127180IPR009057Homeodomain-like
PfamPF139216.5E-20129186No hitNo description
CDDcd001674.61E-16129172No hitNo description
SMARTSM007171.2E-16177225IPR001005SANT/Myb domain
PROSITE profilePS5129420.495177227IPR017930Myb domain
CDDcd001678.91E-13180223No hitNo description
Gene3DG3DSA:1.10.10.606.6E-21181225IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MHRTGPPLTA IDRFLWGSQS NFSHQNNASS KANVVSTNGL LGFSSFGGAI GHEASCWPSY  60
GAAAQYPQEV SFLDGLLGDH GEPLMMSWSG QAEQNPNTGF IEEAKVSERR VGKRARKGLT  120
AAALIKGQWT DEEDRKLIRL VKQYGVRKWA QIAEKLVGRA GKQCRERWHN HLRPDIKKDS  180
WTEEEETILV DAHTEVGNRW AEIAKRIPGR TENAIKNHWN ATKRRQNSRR KNRQAEGKDG  240
NNNKKPQSSI LQNYIRSKNL MSNNNNNNNN AASPNVSTMS NNTPTSSSTL SHENPSKTHL  300
NILATEPSDQ STTSNCCDSP LNLGDTLYND EELHFMQTFF TNNVHTFNPH QQHPSHSIDS  360
SNNSNNIGLI VSPVEPTQNA INPTTSTTPT PLYSDLYLSY LLNGTANSSS SFSSTDHHHL  420
GFYNTSMEYL MAHDQYHEAA AAAASSNEKR EMDLIEMVSS SQFAQGANRT SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-441242262104C-Myb DNA-Binding Domain
1msf_C1e-441242262104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G059700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206396.10.0transcription factor MYB35
TrEMBLA0A251NKV30.0A0A251NKV3_PRUPE; Uncharacterized protein
STRINGEMJ075950.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.18e-58myb domain protein 119