PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G043900.2.p | ||||||||
Common Name | PRUPE_ppa019397mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24526.8 Da PI: 8.4757 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.8 | 1.4e-41 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++gvi++lqqq+++l+ Prupe.6G043900.2.p 32 PCAACKLLRRRCAEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLIEVAENQRADAANSLVYEANLRLRDPVYGCMGVISTLQQQIQSLQ 122 7****************************************************************************************** PP DUF260 92 aelallkee 100 +el+++++e Prupe.6G043900.2.p 123 QELNAVRTE 131 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.709 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-41 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGTMSTARHN NSFGRPQGMM MMNNTTLNTI TPCAACKLLR RRCAEECPFS PYFSPHEPQK 60 FSAVHKVFGA SNVSKMLIEV AENQRADAAN SLVYEANLRL RDPVYGCMGV ISTLQQQIQS 120 LQQELNAVRT EILRYQYKEA TNHMVSSTNI MHHHPSLVST SGMVSIAGPP QAIPKPPPPP 180 PPPPPPSSSV VFSSSSSSSA SSLYNPSTNT TGYSSMSSDN IPYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 25 | 139 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 25 | 139 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G043900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007206519.2 | 1e-166 | LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 9e-71 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A251NK43 | 1e-164 | A0A251NK43_PRUPE; Uncharacterized protein | ||||
STRING | EMJ07718 | 1e-165 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 4e-59 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G043900.2.p |
Entrez Gene | 18772515 |
Publications ? help Back to Top | |||
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