PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G041400.1.p | ||||||||
Common Name | PRUPE_ppa006097mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bZIP | ||||||||
Protein Properties | Length: 442aa MW: 47408.3 Da PI: 6.569 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.2 | 4.7e-10 | 242 | 290 | 5 | 53 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + Prupe.6G041400.1.p 242 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 290 9****************************************99887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-15 | 238 | 302 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.829 | 240 | 303 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.44E-11 | 242 | 293 | No hit | No description |
Pfam | PF00170 | 1.8E-8 | 242 | 290 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.9E-10 | 242 | 296 | No hit | No description |
CDD | cd14703 | 7.35E-23 | 243 | 292 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MSTETRPMQD PQQHQSNPNP KFISINNASS NNPNPKSNPI PLPRSIGISN NANASGVAAT 60 SSSSSSLTSL TLTMLGNSNA PKPFIREEAG AAAAAEAGPH HHNSHRRAHS EVSFRLPQDM 120 MDLSAPDQSK GGSSTASLEE MGSEEDLFST YIDLDKLGGC NCSDQSGGGN KGPNGGPDDG 180 SGEPNVNDGG GGEGEEKRSS RHRHSCSVDG SSTSTGVFGE VMEAKKAMPP DKLAELWNLD 240 PKRAKRILAN RQSAARSKER KARYIQELER KVQTLQTEAT TLSAQLTLFQ RDTTGLSTEN 300 TELKLRLQAM EQQAQLRDAL NEALKKEVER LKIATGEMMS PSESFNLGMH QMPYNHPSAY 360 FPLQQQPGPA GHQNMQMPQF NHSQSNMPTH LLHQSNSHTF SDIMQNGPVG QLQGLDIGTK 420 GAPLVKSEGP SLSASESSTT F* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.579 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G041400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020422431.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 1e-100 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A251NJZ9 | 0.0 | A0A251NJZ9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06436 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 9e-94 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G041400.1.p |
Entrez Gene | 18773074 |
Publications ? help Back to Top | |||
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