PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G041000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 979aa MW: 107299 Da PI: 7.3152 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 1.9e-18 | 411 | 511 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Prupe.6G041000.2.p 411 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIKIQDVKGNEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID- 499 99**************************555556667***************9989999999***9.********************887. PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++lv++++++ Prupe.6G041000.2.p 500 PGGRLVMGFRKA 511 777788877765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-29 | 407 | 512 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-20 | 408 | 511 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.78E-23 | 409 | 510 | No hit | No description |
Pfam | PF02362 | 5.8E-16 | 411 | 510 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.856 | 411 | 512 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-23 | 411 | 512 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 15.147 | 676 | 726 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.9E-13 | 681 | 723 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 979 aa Download sequence Send to blast |
MGSKICMNVL CGTTNTHEWK KGWPLRSGGF AHLCFKCGAA YEKLVFCDKF HAGESGWRDC 60 SLCRKPLHCG CIVSKSLYEC LDYGGVGCIS CAKSSQPRVI QNDDVLNGFG GLKISNYSDR 120 QSTVVQNGAF SNTVDEGKLL QLCKIMEANE SNLLPQPQRG DINVSLVQKK QEEVINHKGE 180 VGLGFSSTTQ PSIGSLTFSK SDNGRTMIED MNKSSSQPSL SMTLGSPSAT PSFVQPFPGG 240 LVDGREQSKT PSSFQQGHGR EQGTTPSFQQ GLVDGREQSK TSSSFQQGLL DGREQSKTSS 300 SFQQGLVDGR EQSKTPSSFQ QGLVDGREQS KTPSSFQQGQ KSRPILPKPL KPGVAMSSET 360 NKGGFPNVRV ARPPAEGRGK NQLLPRYWPR ITDQELQKLS GDLNSTIVPL FEKVLSASDA 420 GRIGRLVLPK ACAEAYFPPI SQSEGLPIKI QDVKGNEWLF QFRFWPNNNS RMYVLEGVTP 480 CIQSMQLQAG DTVTFSRIDP GGRLVMGFRK ASKSLDMQDP QTSILPNGST PGETSCPSVV 540 ENPATGSGHP GLFQTNTGSK DPHLHALSEH LHLTDGDMSL HKNDYHGHRT SEDLLQQPVS 600 NSDKKRARNI GPKSKRLLMH SEDVLELRLT WEEAQDLLRP PPSVKPSIVT IEDHEFEEYD 660 EPPVFGKRSL FTASSSERQE QWAQCDDCSK WRRLPADVLL PPKWTCSENS WDTSRRSCSA 720 PEEMSQKDFD SLLRASKDLK KRRIIENCTE TQVHEPSGLD ALASAAILGD NVVDSGEQSV 780 GATTRHPRHR PGCTCIVCIQ PPSGKGKHKP TCTCNVCLTV RRRFKTLMMR KKKRQSEREA 840 ENAQKDNNNH KDESEINGTS TEVGLHMNHS SENGGCQSRI EADVAESSTA GQIDLNCEPN 900 PYVQASGLTL LRLADAVSQP LNNYRKESCL ANMMCEPQAG IGSSLLTQAT DESERRLSNE 960 GCLSAVAAWD CEGRGDAD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 9e-71 | 389 | 518 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 820 | 831 | RRRFKTLMMRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G041000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421836.1 | 0.0 | B3 domain-containing protein Os07g0679700 | ||||
Refseq | XP_020421837.1 | 0.0 | B3 domain-containing protein Os07g0679700 | ||||
Refseq | XP_020421838.1 | 0.0 | B3 domain-containing protein Os07g0679700 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A251NK06 | 0.0 | A0A251NK06_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241197.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G041000.2.p |
Publications ? help Back to Top | |||
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