PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G041000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 979aa    MW: 107299 Da    PI: 7.3152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G041000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18411511199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kvl+ sd+++ grlvlpk +ae++   +++ e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Prupe.6G041000.1.p 411 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPIKIQDVKGNEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID- 499
                         99**************************555556667***************9989999999***9.********************887. PP

                         SEE..EEEEE-S CS
                  B3  88 sefelvvkvfrk 99 
                          +++lv++++++
  Prupe.6G041000.1.p 500 PGGRLVMGFRKA 511
                         777788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-29407512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-20408511IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-23409510No hitNo description
PfamPF023625.8E-16411510IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856411512IPR003340B3 DNA binding domain
SMARTSM010194.2E-23411512IPR003340B3 DNA binding domain
PROSITE profilePS5105015.147676726IPR011124Zinc finger, CW-type
PfamPF074964.9E-13681723IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 979 aa     Download sequence    Send to blast
MGSKICMNVL CGTTNTHEWK KGWPLRSGGF AHLCFKCGAA YEKLVFCDKF HAGESGWRDC  60
SLCRKPLHCG CIVSKSLYEC LDYGGVGCIS CAKSSQPRVI QNDDVLNGFG GLKISNYSDR  120
QSTVVQNGAF SNTVDEGKLL QLCKIMEANE SNLLPQPQRG DINVSLVQKK QEEVINHKGE  180
VGLGFSSTTQ PSIGSLTFSK SDNGRTMIED MNKSSSQPSL SMTLGSPSAT PSFVQPFPGG  240
LVDGREQSKT PSSFQQGHGR EQGTTPSFQQ GLVDGREQSK TSSSFQQGLL DGREQSKTSS  300
SFQQGLVDGR EQSKTPSSFQ QGLVDGREQS KTPSSFQQGQ KSRPILPKPL KPGVAMSSET  360
NKGGFPNVRV ARPPAEGRGK NQLLPRYWPR ITDQELQKLS GDLNSTIVPL FEKVLSASDA  420
GRIGRLVLPK ACAEAYFPPI SQSEGLPIKI QDVKGNEWLF QFRFWPNNNS RMYVLEGVTP  480
CIQSMQLQAG DTVTFSRIDP GGRLVMGFRK ASKSLDMQDP QTSILPNGST PGETSCPSVV  540
ENPATGSGHP GLFQTNTGSK DPHLHALSEH LHLTDGDMSL HKNDYHGHRT SEDLLQQPVS  600
NSDKKRARNI GPKSKRLLMH SEDVLELRLT WEEAQDLLRP PPSVKPSIVT IEDHEFEEYD  660
EPPVFGKRSL FTASSSERQE QWAQCDDCSK WRRLPADVLL PPKWTCSENS WDTSRRSCSA  720
PEEMSQKDFD SLLRASKDLK KRRIIENCTE TQVHEPSGLD ALASAAILGD NVVDSGEQSV  780
GATTRHPRHR PGCTCIVCIQ PPSGKGKHKP TCTCNVCLTV RRRFKTLMMR KKKRQSEREA  840
ENAQKDNNNH KDESEINGTS TEVGLHMNHS SENGGCQSRI EADVAESSTA GQIDLNCEPN  900
PYVQASGLTL LRLADAVSQP LNNYRKESCL ANMMCEPQAG IGSSLLTQAT DESERRLSNE  960
GCLSAVAAWD CEGRGDAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-713895182131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1820831RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G041000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421836.10.0B3 domain-containing protein Os07g0679700
RefseqXP_020421837.10.0B3 domain-containing protein Os07g0679700
RefseqXP_020421838.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A251NK060.0A0A251NK06_PRUPE; Uncharacterized protein
STRINGXP_008241197.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]