PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G039700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 309aa    MW: 34031.9 Da    PI: 5.4397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G039700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-20152201255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+  l+g
  Prupe.6G039700.1.p 152 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVLLKG 201
                         89*******.**********84....34*********************977766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.5E-6931307IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541712.62E-22152210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-30152210IPR001471AP2/ERF domain
SMARTSM003803.6E-37152215IPR001471AP2/ERF domain
PfamPF008472.0E-12152196IPR001471AP2/ERF domain
CDDcd000182.08E-33152211No hitNo description
PROSITE profilePS5103224.329152209IPR001471AP2/ERF domain
PRINTSPR003672.3E-10153164IPR001471AP2/ERF domain
PRINTSPR003672.3E-10175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLLDVSQEQT YISNFISSPS KPMTSFQTIS SVNPMVKFSE QVTTMTKLIT HENQNSPVNP  60
THLPPKLVRI ILTDADATDS SSDEEDSGVR RVKRHVRQIS LELSSPSSSS SPSSSSSSSF  120
SSGHSKRLRK DQRPTKKLGS RSPGSDQTRL NKFRGVRRRP WGRWAAEIRD PTRRKRVWLG  180
TFDTAEEAAT VYDRAAVLLK GPDAVTNFPN AAMTEAKVVT DVVVPAAEES YGCGSPTPNE  240
AATSPTSVLR YDELTPFDGF SYGEVDAFGF DIDLPLSLPD IMLSNNNNFA HDEFGEFDVN  300
DFWVDVIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-21139210473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156175RRRPWGRWAAEIRDPTRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G039700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695550.0KT369555.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206784.20.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A251NJX40.0A0A251NJX4_PRUPE; Uncharacterized protein
STRINGEMJ079830.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-30cytokinin response factor 1