PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G038900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 516aa MW: 58382.7 Da PI: 9.9937 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.2 | 6.3e-18 | 143 | 229 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v + +l lp kf+e+h +k + +++lede+g++++ + +k+ + l++GW++F+ +++L++gD +vF+l++ +f Prupe.6G038900.2.p 143 FVKSMVRSHVYSCFWLGLPSKFCEDHLSK-MG-SEMVLEDEDGNEYDAVY--IGKRAG--LSGGWRGFALEHKLDDGDALVFELTEPARF- 226 89************************555.33.49***************..555544..9**********************9765555. PP .EEE CS B3 92 lvvk 95 ++ Prupe.6G038900.2.p 227 -KIY 229 .444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-20 | 136 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-22 | 138 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.31E-25 | 141 | 232 | No hit | No description |
Pfam | PF02362 | 1.3E-16 | 143 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-23 | 143 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.098 | 143 | 234 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MVAAVDSFTA NTYEEARNQR LEENKRKFQD LGISNISKTL THLTASPNKS QQRVSRPKAK 60 NTCFDLEPRR SSRQRNPIQS YRDDVDIGLP TLRKRSRKTS SSWGSYLARP IEEVRAASYE 120 ERSAAFQAAE KLQENLQTEN PTFVKSMVRS HVYSCFWLGL PSKFCEDHLS KMGSEMVLED 180 EDGNEYDAVY IGKRAGLSGG WRGFALEHKL DDGDALVFEL TEPARFKIYI VKAYPMPSLE 240 CFKNNVDKEE ITSAEKTSKA AMKTDSESNQ KRRSKRGIVP EMDESQTSPH PEPNQKRRSK 300 RGTVPAIVDT KTSPDSESIQ KRRSKRGTVP AMVDTKTSQD SESIQKLRSE RGVVPVMEDS 360 KTSPVLEPNQ RRRSKRGMVP EMDDTKTSPD SESNQKQRSK RGIVPEMDDT KTTPKVLPDS 420 PKGQEIKQEV SPMKKNEVAP KQIRKKAKAN RVRSTENPEG CEVQEASTES PEGCEVKQEA 480 STTETDSRVV KDEKECVARK PRKKVVKERL FRKRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G038900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016651487.1 | 0.0 | PREDICTED: titin homolog isoform X2 | ||||
Refseq | XP_016651490.1 | 0.0 | PREDICTED: titin homolog isoform X3 | ||||
TrEMBL | A0A251NJW3 | 0.0 | A0A251NJW3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008239059.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 1e-70 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G038900.2.p |