PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G038900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 616aa    MW: 69933.8 Da    PI: 10.1791
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G038900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.3e-18143229195
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v +  +l lp kf+e+h +k  +  +++lede+g++++  +   +k+ +  l++GW++F+ +++L++gD +vF+l++  +f 
  Prupe.6G038900.1.p 143 FVKSMVRSHVYSCFWLGLPSKFCEDHLSK-MG-SEMVLEDEDGNEYDAVY--IGKRAG--LSGGWRGFALEHKLDDGDALVFELTEPARF- 226
                         89************************555.33.49***************..555544..9**********************9765555. PP

                         .EEE CS
                  B3  92 lvvk 95 
                          ++ 
  Prupe.6G038900.1.p 227 -KIY 229
                         .444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-20136232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22138231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-24141232No hitNo description
PfamPF023621.8E-16143230IPR003340B3 DNA binding domain
SMARTSM010195.4E-23143234IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098143234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MVAAVDSFTA NTYEEARNQR LEENKRKFQD LGISNISKTL THLTASPNKS QQRVSRPKAK  60
NTCFDLEPRR SSRQRNPIQS YRDDVDIGLP TLRKRSRKTS SSWGSYLARP IEEVRAASYE  120
ERSAAFQAAE KLQENLQTEN PTFVKSMVRS HVYSCFWLGL PSKFCEDHLS KMGSEMVLED  180
EDGNEYDAVY IGKRAGLSGG WRGFALEHKL DDGDALVFEL TEPARFKIYI VKAYPMPSLE  240
CFKNNVDKEE ITSAEKTSKA AMKTDSESNQ KRRSKRGIVP EMDESQTSPH PEPNQKRRSK  300
RGTVPAIVDT KTSPDSESIQ KRRSERGVVP VMEDSKTSPV LEPNQRRRSK RGMVPEMDDT  360
KTFPDSESIQ KRRSERGVVP VMKDSKTSPV LEPNQRRRSK RGMVPEMDDT KTFPDSEPNQ  420
KRRSKRGTVP AMVDTKTSQD SESIQKLRSE RGVVPVMEDS KTSPVLEPNQ RRRSKRGMVP  480
EMDDTKTSPD SESNQKQRSK RGIVPEMDDT KTTPKVLPDS PKGQEIKQEV SPMKKNEVAP  540
KQIRKKAKAN RVRSTENPEG CEVQEASTES PEGCEVKQEA STTETDSRVV KDEKECVARK  600
PRKKVVKERL FRKRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G038900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206339.20.0titin homolog
TrEMBLA0A251NLM70.0A0A251NLM7_PRUPE; Uncharacterized protein
STRINGXP_008239059.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124332328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-69B3 family protein