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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Prupe.6G037000.1.p |
| Common Name | PRUPE_ppa025834mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
GRAS |
| Protein Properties |
Length: 411aa MW: 46253.6 Da PI: 6.9403 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Prupe.6G037000.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 389.7 | 3.2e-119 | 13 | 409 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal.......... 81
+++lL++cAe +s+ d++ a++l++ ls +sp gd+++Rl++ f++AL+ rl++ ++ ++al++ +t+ +ss++ l
Prupe.6G037000.1.p 13 MRQLLITCAELISQLDFSSARRLISLLSSKSSPFGDSTERLTHQFVKALSLRLNNPNPSSSAALTTAATAAASSSSNYLLLeeeddnnnee 103
589****************************************************999999888777776555333333334556666666 PP
GRAS 82 ......klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgspesgskee 157
++++++P+++fshltaNqaIlea++++ + +Hi+Dfdi++G+QWp+L+qaL++R+ ++pp+lRiT+ g+ s
Prupe.6G037000.1.p 104 alhscyLTLNQITPFIRFSHLTANQAILEAIDSShHSIHILDFDIMHGVQWPPLMQALTDRSynsdrtvqHPPPMLRITATGH----SLAL 190
65554355************************99899*************************766666655699*********....99** PP
GRAS 158 leetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
l +tg+rL kfA++lg+ f+f++l +++ + +++++L + p+EalaVn+vl lh+l+ ++ + +L+ +ksl+Pkv++++++
Prupe.6G037000.1.p 191 LLKTGDRLLKFANSLGLAFHFHPLvlndAVQPSDIISPSTLGLLPNEALAVNCVLYLHTLVTDDSREL---SLFLRKIKSLNPKVLTIANK 278
************************766666678999************************95555544...59****************** PP
GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaa 334
ea+hn++ F++rf+eale+y a+fdslea+lp++s+er+ vE +++grei++vv +e+ +rr+rhe++e+ W+ +l++aGF++v+ls +a
Prupe.6G037000.1.p 279 EANHNHPLFFNRFVEALEHYGAVFDSLEATLPPNSRERQAVEDVWMGREIRDVVGAEEGRRRQRHEKYETyWEVMLRRAGFENVALSPFAL 369
*******************************************************************9866******************** PP
GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
+qaklllr ++ s+gy++ ++s++lgW++rpL+svS+W
Prupe.6G037000.1.p 370 SQAKLLLRLHYpSEGYQLRIINDSFFLGWQNRPLFSVSSW 409
**************************************** PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MPRGLMTTSP THMRQLLITC AELISQLDFS SARRLISLLS SKSSPFGDST ERLTHQFVKA 60
LSLRLNNPNP SSSAALTTAA TAAASSSSNY LLLEEEDDNN NEEALHSCYL TLNQITPFIR 120
FSHLTANQAI LEAIDSSHHS IHILDFDIMH GVQWPPLMQA LTDRSYNSDR TVQHPPPMLR 180
ITATGHSLAL LLKTGDRLLK FANSLGLAFH FHPLVLNDAV QPSDIISPST LGLLPNEALA 240
VNCVLYLHTL VTDDSRELSL FLRKIKSLNP KVLTIANKEA NHNHPLFFNR FVEALEHYGA 300
VFDSLEATLP PNSRERQAVE DVWMGREIRD VVGAEEGRRR QRHEKYETYW EVMLRRAGFE 360
NVALSPFALS QAKLLLRLHY PSEGYQLRII NDSFFLGWQN RPLFSVSSWH *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
