PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G015400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 692aa    MW: 76619.9 Da    PI: 10.3379
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G015400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.2e-101162345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwq 45
                        +W t E++llv+av+++G+++W+++a +++         + +t+ +c++++ 
  Prupe.6G015400.1.p 11 PWGTLEELLLVCAVNRHGTKSWDSVAMEVQtkssstfasTLLTAQDCRDKFD 62
                        7************************************99999*****99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-6867IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-5995IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-4968IPR009057Homeodomain-like
CDDcd001676.74E-61165No hitNo description
PfamPF002493.9E-91163IPR001005SANT/Myb domain
SMARTSM002971.9E-14322431IPR001487Bromodomain
SuperFamilySSF473701.44E-16328433IPR001487Bromodomain
Gene3DG3DSA:1.20.920.108.3E-15332433IPR001487Bromodomain
CDDcd043691.57E-13333426No hitNo description
PfamPF004394.0E-10336416IPR001487Bromodomain
PROSITE profilePS5001411.257341412IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MAREHGTSGH PWGTLEELLL VCAVNRHGTK SWDSVAMEVQ TKSSSTFAST LLTAQDCRDK  60
FDDLKRRFVS KNDNQSHSLG QMVDELRNLR VDELRHEVHR RDVSIVSLEL KVKRLEEERE  120
RSLKEEAEAH PNNDLQSGGE DQLEASPENI AGETNSGEDF DSDERENRSF NESNSTSQRG  180
EAKENSVVAK QSKEEEPGPD GNEPDRVRTG TRTEPDRDCS VNGKVIDDEK EDNKKGGETV  240
GATQLGESNE FWESVSESKR EGKRGGVASK QNSDVQSSAS LSKRKRRRGG GGGEGGGRRS  300
RSRSSSGEEA EGDEVSPATS KGIKPKLVKH EPLIKVIRII RSHRLGSVFE RRLRSQESER  360
YKSLIRQHMD LHEVQSRLNK GVYTDCTHKF FRDLLLLFNN AVVFLRKTSP EHMAAQELRA  420
IVLKEMTDQL PKPQPAIDTV KLHAPKLESK VPKIEPDSSV KPSKPSIVVC GLRRSANGGG  480
GAKNRKGDKR ERGEVEEKGK ASEVEDKGIR KKRTQERGGP RGSRRGSSKN VGKTEHAYGG  540
NELSSHDGLE EMKMEKIENA KTTKQGAART FLKRMKQNST STVVKRGSSD VSEGGESEDS  600
MVEEEEKKQK GKTKPDERKK RVTRSSTGRR GGRGGGRRNE ESSGRAKRGV GRPPKRPETT  660
EAGNGSGKRG RGNGEADQMG SAGRPRKRTR R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282287KRKRRR
2283287RKRRR
3287297RGGGGGEGGGR
4607619KQKGKTKPDERKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G015400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422278.10.0uncharacterized protein LOC18775627
TrEMBLA0A251NIS30.0A0A251NIS3_PRUPE; Uncharacterized protein
STRINGXP_008243616.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-40DNA-binding bromodomain-containing protein