PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G011300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 685aa    MW: 79166.3 Da    PI: 9.1099
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G011300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.24.9e-2241128290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          Yn+YA+++GFsvr+ +++++ +++   +  + Cskeg+r +++ + e +  ++ etrtgC+a+++   ++ +g w+v++++ eHnHela
  Prupe.6G011300.1.p  41 LYNSYATRTGFSVRRGQKRYN-TKKVLRQFSYFCSKEGFRLDSDPS-EVSMANKLETRTGCEARIRFAFQNdNGMWKVSHFVYEHNHELA 128
                         7****************9998.66779999************9999.99999****************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1841128IPR004330FAR1 DNA binding domain
PfamPF105513.5E-33215309IPR018289MULE transposase domain
PROSITE profilePS5096610.126496532IPR007527Zinc finger, SWIM-type
PfamPF044348.8E-6496531IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016507534IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDNGKSNQSN NPLLYTAFFS PLFLHDLLGK VVSTEEEAYN LYNSYATRTG FSVRRGQKRY  60
NTKKVLRQFS YFCSKEGFRL DSDPSEVSMA NKLETRTGCE ARIRFAFQND NGMWKVSHFV  120
YEHNHELAMP EERQFLRSNR KVSEAHLDCY NVVNKEKMVM IEAGDAQSLI NLFKRKQAED  180
PMFFYTVQVD QENRMTNFFW RDGRSRIDYD CFGDVVVFDT TYRTNRYNMI CAPFVGVNHH  240
WKNVLFGCAF LLDEKIDSFI WLFETFLESM GGRKPKTIFT DQCQAMANGI EKVFPGVCHH  300
LCSWHISQNA ARNLGSYYGN PEFKHMFNKC LQGYCETELE FQSTWDDLLA KFNLTGNLWL  360
KTLYGLRAKW CPVFSQHIFT AKIKSSQRSE STNNVFHQMS TKTMSLTQFV HHYDKQAEKM  420
RSSELEESFR CNQGLSSRIA KSSGLMNHAA TIYTRKIFKL FEKEFVDSLG VMMHEVGSDG  480
TIHSFELNEE GHKRVYIVQL NSLNCSISCS CKMFESMGLL CRHTLRVLNV KCWSQIPKQY  540
ILKRWTKDAN KGLEASEHGE LLQTKGKSSV TLRRNTLMRT AYDVLTKASE TENTTRIALQ  600
KLREIAGLIE KEMIKSKGEV NAKIHDSLDD CNATTFDETP VRNPSCVRPK GISNARLKSV  660
MEKRRRKTSK DIVSSSKKVS YFAY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G011300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412974.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020422922.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A251NIG20.0A0A251NIG2_PRUPE; Uncharacterized protein
STRINGEMJ207290.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5