PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G004700.1.p
Common NamePRUPE_ppa006730mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 398aa    MW: 42233.5 Da    PI: 7.2613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G004700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-1756103148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl
  Prupe.6G004700.1.p  56 RGPWTPEEDELLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 103
                         89******************************99************97 PP
2Myb_DNA-binding46.68.1e-15114154648
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Prupe.6G004700.1.p 114 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 154
                         89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2147105IPR009057Homeodomain-like
PROSITE profilePS5129416.55351103IPR017930Myb domain
SuperFamilySSF466899.17E-2953150IPR009057Homeodomain-like
SMARTSM007172.2E-1355105IPR001005SANT/Myb domain
PfamPF002493.0E-1556103IPR001005SANT/Myb domain
CDDcd001673.71E-1158103No hitNo description
PROSITE profilePS5129424.397104158IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-24106159IPR009057Homeodomain-like
SMARTSM007172.7E-13108156IPR001005SANT/Myb domain
PfamPF002491.3E-13114154IPR001005SANT/Myb domain
CDDcd001671.79E-11114154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MRNPSSSSSS SSSKAAAAAA TATSIPTKIT SSSSSKAAGT SGGSKTPCCI KVGLKRGPWT  60
PEEDELLSNY INKEGEGRWR TLPKRAGLLR CGKSCRLRWM NYLRPSVKRG QIAPDEEDLI  120
LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP LNPDIHSSAT  180
VAAADMDSNI NKAATVSSSK TNRFSSNTNP SPPPTSEPSE PVAHHHGAAP NTNGNNGNIV  240
TNIANKENGY LVDDQELGTV VHGYANMTSS DHASAAAMGT LSLRSNGSNN GGALLGGNEE  300
DDDMNCCADD VFSSFLNSLI NEDPFSGQHH LQQQVLLQNG NNAHNAAAAD GSDHHVPLVS  360
SGAGATAPST FGWESAVLMS SAFIQNDHHR VLNDQTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-25541582105C-Myb DNA-Binding Domain
1msf_C2e-25541582105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G004700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0201121e-152KJ020112.1 Malus hybrid cultivar MYB12a protein (MYB12a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205298.10.0transcription repressor MYB5
TrEMBLM5VYH30.0M5VYH3_PRUPE; Uncharacterized protein
STRINGEMJ064970.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-78myb domain protein 5