PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G239000.1.p | ||||||||
Common Name | PRUPE_ppa011508mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 208aa MW: 22764.9 Da PI: 8.1747 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 89.5 | 3.3e-28 | 11 | 63 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 + +Y+eCl+NhAaslG++a+DGCgEf+ + ++++ +l+CaACgCHRnFHRr + Prupe.5G239000.1.p 11 NEVYRECLRNHAASLGSYATDGCGEFTLD---DASPGGLQCAACGCHRNFHRRVTY 63 678*************************8...6689*****************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-23 | 13 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.902 | 14 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-17 | 14 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.1E-23 | 14 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.08E-16 | 117 | 187 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-29 | 120 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.9E-29 | 130 | 188 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEEDHHDQNT NEVYRECLRN HAASLGSYAT DGCGEFTLDD ASPGGLQCAA CGCHRNFHRR 60 VTYAATSSQA AGGSGRSSGH HHHHHNRVIM SSSSRGRDPS DNTIATQDQL MDYNAGGGGS 120 PDSGDRMSGK KRFRTKFTAE QKEKMLAFAE KLGWKLQRKD LEDEIERFCR SIGVSRQVFK 180 VWMHNHKNLS SSSTSASTGN ASSLTTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-23 | 131 | 193 | 18 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G239000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209606.1 | 1e-155 | zinc-finger homeodomain protein 11 | ||||
TrEMBL | M5WVJ3 | 1e-153 | M5WVJ3_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10805 | 1e-154 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-40 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G239000.1.p |
Entrez Gene | 18777739 |