PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G236400.1.p | ||||||||
Common Name | PRUPE_ppa000543mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NF-X1 | ||||||||
Protein Properties | Length: 1106aa MW: 119838 Da PI: 8.0026 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 19.9 | 1.6e-06 | 358 | 375 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C++ CH+GpC++C Prupe.5G236400.1.p 358 CGNHACGEVCHPGPCGEC 375 ****************** PP | |||||||
2 | zf-NF-X1 | 17.6 | 8.2e-06 | 410 | 433 | 1 | 18 |
zf-NF-X1 1 CG......kHkCqklCHeGpCppC 18 CG +H+Cq+ CH+G+CppC Prupe.5G236400.1.p 410 CGkslpceMHQCQEVCHTGDCPPC 433 778888889*************** PP | |||||||
3 | zf-NF-X1 | 17.3 | 1e-05 | 512 | 529 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC Prupe.5G236400.1.p 512 CGQHSCESLCHSGHCPPC 529 ****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 1.48E-7 | 117 | 186 | No hit | No description |
PROSITE profile | PS50016 | 8.689 | 124 | 185 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 127 | 182 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.48 | 127 | 183 | IPR001841 | Zinc finger, RING-type |
CDD | cd06008 | 2.11E-5 | 216 | 277 | No hit | No description |
SMART | SM00438 | 0.023 | 239 | 257 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.3 | 241 | 256 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 9.27E-11 | 284 | 332 | No hit | No description |
Pfam | PF01422 | 0.0068 | 285 | 311 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0089 | 294 | 313 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.52E-10 | 348 | 391 | No hit | No description |
SMART | SM00438 | 7.2E-4 | 358 | 377 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0014 | 358 | 375 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.36E-13 | 406 | 452 | No hit | No description |
Pfam | PF01422 | 1.3E-4 | 410 | 433 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 7.5E-5 | 416 | 435 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.11E-4 | 464 | 523 | No hit | No description |
SMART | SM00438 | 270 | 474 | 508 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 18 | 474 | 485 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.23E-8 | 502 | 545 | No hit | No description |
SMART | SM00438 | 0.002 | 512 | 531 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 9.8E-5 | 512 | 529 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.00E-6 | 559 | 607 | No hit | No description |
SMART | SM00438 | 0.051 | 569 | 587 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.6 | 569 | 586 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 1.4 | 622 | 652 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.041 | 622 | 637 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.07E-5 | 650 | 699 | No hit | No description |
Pfam | PF01422 | 64 | 654 | 680 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.011 | 661 | 682 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01424 | 1.9E-6 | 793 | 857 | IPR001374 | R3H domain |
Gene3D | G3DSA:3.30.70.330 | 1.0E-5 | 896 | 949 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1106 aa Download sequence Send to blast |
MSSQVPNERR DRSRFPAQPP QPAQSARREW VPRGSNPTTA AVNPPPSFNS NIPNGNVGQP 60 NYSSAPSESR QQHRGNNASR GHMGRPMNHG RERGRSENQE EVRLKDSNLP QLVQEIQDKL 120 TKGTVECMIC YDMVRRSAPV WSCSSCYSIF HLNCIKKWAR APTSIDMSAG KNQGFNWRCP 180 GCQYVQLTSS KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKQLERDVPG RGVSEDDLCP 240 HVCVLQCHPG PCPPCKAFAP PRLCPCGKKV ITTRCSDRTS VLTCGQHCNK LLDCLRHHCE 300 RTCHVGPCDP CQVLVDASCF CKKKVEVVLC GDMTVKGEVK AEDGVFSCSS TCGKKLTCGN 360 HACGEVCHPG PCGECNLMPT KIKTCHCGKT SLQGERQSCL DPVPTCSQTC GKSLPCEMHQ 420 CQEVCHTGDC PPCLVKVSQK CRCGSTSRTV ECFKTTMEID KFTCDKPCGR KKNCGRHRCS 480 ERCCPLSNSN NVLSGDWDPH FCSMPCGKKL RCGQHSCESL CHSGHCPPCL DTIFADLTCA 540 CGRTSIPPPL PCGTPPPSCQ LPCSVPQPCG HSSSHSCHFG ECPPCSVPVA KECIGGHVVL 600 RNIPCGSRDI KCNKLCGKTR QCGMHACGRT CHPPPCDTSS SVEPGTKTSC GQTCGAPRRD 660 CRHTCTALCH PYAPCPDNRC DFPVTITCSC GRITANVPCD SGGSNASFKA DTVYEASIIQ 720 RLPAPLQPIE STTKKIPLGQ RKFMCDDECA KLERKRVLAD AFDIASPNLD ALHFGENSAV 780 SELLSDLFRR DAKWVLSVEE RCKYLVLGKS RGPTSGLRVH VFCPMLKEKR DVVRMIAERW 840 KLAVQSAGWE PKRFIVVHVT PKSKTPARVI GVKGTTTVNA PQPPAFDHLV DMDPRLVVSF 900 PDLPRDADIS ALVLRFGGEC ELVWLNDKNA LAVFNDPARA ATAMRRLDNG TLYHGAINVL 960 SNGSASVASS GSNAWVGLGT AKEGVSTALR GNPWKKAVIR EPGWREDSWG DEEWAGGSAD 1020 VQASVWKKEA PITASLNRWS VLDSDVALGS SSVSPSIEDS GKQSLGGLNP ALESNASGST 1080 SGGQQHGGNI ADTSEVVDDW EKAYE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.17250 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G236400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210913.1 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | M5WEA9 | 0.0 | M5WEA9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ12112 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6972 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G236400.1.p |
Entrez Gene | 18776159 |