PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G232600.1.p | ||||||||
Common Name | PRUPE_ppa017419mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WOX | ||||||||
Protein Properties | Length: 404aa MW: 45440.7 Da PI: 8.3819 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.3 | 4.8e-22 | 91 | 150 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Prupe.5G232600.1.p 91 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 150 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.4 | 2.7e-37 | 90 | 152 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Prupe.5G232600.1.p 90 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 152 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.6E-5 | 88 | 155 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-9 | 91 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.84E-13 | 91 | 157 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.7E-20 | 91 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.84E-6 | 92 | 152 | No hit | No description |
PROSITE profile | PS50071 | 11.224 | 96 | 151 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MWMMGYNESG HADFNMPDSF NGRKLRPLIP RPLVPSANNA TSSVIAATPP CLNRIHGVSH 60 DFFTQYHHLA AMAEQNKRSE FINTPQVVVS SRWNPTPEQL RALEELYRRG TRTPSAEQIQ 120 HITAQLRKYG KIEGKNVFYW FQNHKARERQ KRRRQMESSV PSAQPDHEIS LSSTDNQKKE 180 SLGASRTGFE VEQTKNWAPS TNCSATLAEE SVSIQRAAKA AVAAAECRTD GWIQFDEEEL 240 QQRRNFVERN ATWQMMQLSC PPPPSPLPPQ YPHPPTHLII NTPACSTANS NSTNNLTSSR 300 ASRAATVRTM DQRLIKGHDL SILLTPYSSI SEESGFINFN YPNHNTSVEQ DHGCGESQTL 360 QLFPLRSGHA NANANLEKDH AELSANFSRA QPYPFFEFLP LKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.11638 | 1e-40 | shoot |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G232600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419129.1 | 0.0 | WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A251PCN1 | 0.0 | A0A251PCN1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240291.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 4e-58 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G232600.1.p |
Entrez Gene | 18776362 |