PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G230100.2.p | ||||||||
Common Name | PRUPE_ppa000733mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 1033aa MW: 117195 Da PI: 8.3192 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.4e-10 | 430 | 474 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ Ed+ l+++v++ G ++W +a +g++Rt+ qc r+q Prupe.5G230100.2.p 430 KSWTAKEDKNLLHLVQEKGIDNWFNVAVLLGTNRTPFQCLARYQR 474 58*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.7e-14 | 483 | 526 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ lG g+W ++a+ + gRt+ qc +rw k Prupe.5G230100.2.p 483 REWTKDEDARLRSAVEALGEGDWQSVASALE-GRTGSQCSNRWKK 526 68*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 44.7 | 3e-14 | 536 | 579 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 grWT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + Prupe.5G230100.2.p 536 GRWTPEEDKRLKVAQMLFGPKNWNKTAQFVP-GRTQAQCRDRYVN 579 8******************************.***********77 PP | |||||||
4 | Myb_DNA-binding | 44.9 | 2.7e-14 | 588 | 631 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT+eEd +l +a++++G W+++a++++ +Rt+++c rw + Prupe.5G230100.2.p 588 GEWTEEEDSRLREAIAEYGYC-WSKVAACVP-RRTDNMCWRRWKVL 631 68*****************99.*********.***********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.703 | 324 | 423 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.5E-4 | 328 | 425 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 331 | 347 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 396 | 436 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.03E-16 | 406 | 473 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.556 | 424 | 476 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-9 | 428 | 478 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-9 | 430 | 474 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.26E-7 | 431 | 476 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-12 | 437 | 482 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-19 | 461 | 533 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.563 | 477 | 532 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 481 | 530 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-17 | 483 | 535 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-10 | 484 | 528 | No hit | No description |
Pfam | PF13921 | 7.0E-14 | 485 | 546 | No hit | No description |
SuperFamily | SSF46689 | 1.24E-23 | 532 | 628 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.152 | 533 | 581 | IPR017930 | Myb domain |
SMART | SM00717 | 3.3E-12 | 534 | 583 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 536 | 586 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.46E-10 | 537 | 581 | No hit | No description |
PROSITE profile | PS51294 | 22.972 | 582 | 636 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-11 | 586 | 634 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-16 | 587 | 630 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-13 | 588 | 630 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.90E-10 | 589 | 632 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1033 aa Download sequence Send to blast |
SLLRGTPPPL RLAMSPLTGS EEDQFSGSDR EEEEEDDDED FDEDMEAIRR ACMLTGKNPD 60 DLNPNNNNHG GDDPRHASGS ESESDSDEGD DDIELLRKIR SRFSNISNFC EPLSLKPLSS 120 LPPAVSDDEE DDYQTLLSVQ KRFAAYQNDT CKPVKETCNE IAHESSQGTE DACMAIHPLS 180 DNAEGQPSAS IELQQSDSCR PSTLPAKYST FPKSAQVFMD AIKKNRSSQK FLRSKLVQIE 240 AKIEENRKLK ERVKILKDFQ VSCKKRTGEA LSQKKDPRVQ LILVNRPRKF RDLKAHDKKI 300 SAMFYGPEEN SHVANYRMTL TKFLHSLDRK KWSKAEKKAL EKGIRQQFQE MVLQFSVHES 360 SCSERPYGDS NHIDDILASI KDLEITPEKI REFLPKVNWE QLASMYIVGR SGAECEARWL 420 NWEDPLINHK SWTAKEDKNL LHLVQEKGID NWFNVAVLLG TNRTPFQCLA RYQRSLNASI 480 LKREWTKDED ARLRSAVEAL GEGDWQSVAS ALEGRTGSQC SNRWKKSLHP TRKREGRWTP 540 EEDKRLKVAQ MLFGPKNWNK TAQFVPGRTQ AQCRDRYVNS LEPSLKWGEW TEEEDSRLRE 600 AIAEYGYCWS KVAACVPRRT DNMCWRRWKV LFPDDVCLLK EEKRIRKVAL MCNFVDRETE 660 RPALGPNDFH PPIVTSTKTL TYSRKQKGKL SKVSKKIRSR RQKNGQSCSK VSEIDSFDKV 720 ETCDGHDASN TKNKVRKQRR IRHKGTHCEQ DTHKEPREMS CSDQIVGTSD GDDTTLACFL 780 RNKSKKRKLG PVPSINGKKK RKLVASDSAV QECPANSIEE GSEVHPEMNK VCDGNQIVSF 840 RKDDEFIVHC DDRISERMPT CSVQSSHLNG NTMASDKEPD GLKLVSGWKA GLQEPVRKVV 900 AIDPESDGDT DDVVLASWRK KKLKKRHPQT AKSGPHACPP SGVTTRSEPL PKRVDQSNDR 960 SQVPFVAVGN EPGAVDIGKQ HGVDHCETVR EIVNIGAEGD HEAGDTTLAC FLRNKSKNRQ 1020 RQSRRGDNQK PR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-28 | 398 | 622 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-28 | 398 | 622 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 779 | 787 | LRNKSKKRK |
2 | 785 | 801 | KRKLGPVPSINGKKKRK |
3 | 797 | 802 | KKKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G230100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210492.1 | 0.0 | uncharacterized protein LOC18776212 | ||||
TrEMBL | A0A251PE60 | 0.0 | A0A251PE60_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | EMJ11691 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G230100.2.p |
Entrez Gene | 18776212 |