PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G217200.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TCP | ||||||||
Protein Properties | Length: 469aa MW: 53623.2 Da PI: 6.7635 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.6 | 9.1e-38 | 172 | 334 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec...eaesss 79 k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl qa p+ik+l+g+ s+s+a ++c + Prupe.5G217200.3.p 172 CKRDRHSKINTARGLRDRRMRLSLEVARKFFWLQDALHFDKASKTVEWLLIQATPEIKKLVGDckhmmsstkSTSPAtsESCeviS---GI 259 69*************************************************************99888766633333323333331...22 PP TCP 80 ssasnsssg.........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +a+ + +ak+ + +++ +++++++ l+k sr+kararare+ rek+r+ Prupe.5G217200.3.p 260 DEAA----TntnihinidggndgddklirsceiqPSAKERKVARRQLSRKTAFHPLSKASREKARARAREKAREKQRTH 334 2222....12334466888999999******9984444444444555555557**********************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.1E-40 | 173 | 333 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.99 | 173 | 231 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.291 | 313 | 330 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MFPSNSNNNL NNTGNELPVS YSHVDQSFFH SRPFLHEITT LNPNSLHPNP NSKQEEEEEQ 60 QQQQEGPHHH PLSFFYIPSP FEDDDVSLFQ QHHHYDHHHD HVHDMPLHDS QAPPLTTMRE 120 AVAANNTLAD DHRQTTTTST TLNIKMVDWD SNKNHGEMMN MDQPQIPRRR SCKRDRHSKI 180 NTARGLRDRR MRLSLEVARK FFWLQDALHF DKASKTVEWL LIQATPEIKK LVGDCKHMMS 240 STKSTSPATS ESCEVISGID EAATNTNIHI NIDGGNDGDD KLIRSCEIQP SAKERKVARR 300 QLSRKTAFHP LSKASREKAR ARAREKAREK QRTHQRVVDV DDQSKKQRGD QENLSRLSSW 360 SPFETGEESA GTQSHNNNNN ININSLEGLV HHEIEEPMSS CQVGDHPDLV VDHGTTHDPL 420 VIMGKWSPPS IFSSLHQNIG ISQEHHQFAD FQFLGKPWEV YNNTHNLF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.5G217200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020419087.1 | 0.0 | transcription factor CYCLOIDEA | ||||
Refseq | XP_020419089.1 | 0.0 | transcription factor CYCLOIDEA | ||||
Refseq | XP_020419090.1 | 0.0 | transcription factor CYCLOIDEA | ||||
TrEMBL | A0A251PBZ8 | 0.0 | A0A251PBZ8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244033.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 9e-23 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G217200.3.p |