PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G210500.6.p
Common NamePRUPE_ppa003436mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 575aa    MW: 63120.2 Da    PI: 8.6476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G210500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.4e-18270319255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Prupe.5G210500.6.p 270 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 319
                         889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-24265340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-19267339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-15270322No hitNo description
PfamPF000103.2E-15270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-13274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGY LETHDFLQPL ERMGKKCIAK  60
EETSVEISTA EKPVSHAAAA AAQPTSSVEH ILPGGIGTYT ISHISYFNQR VPKPEGSPVF  120
TVTQPQASST DRNVEEHSNC SSYTGSGFTL WEESALKNKG KTGKENLGER PVGIVRGQWT  180
SSERPAQSSS NNHRNCFSAQ SSGQKNISFM DMMKSAAKGS TQEDELDDEE EFVLKKETST  240
TTTTATTPYK GDLRVKVDVK GSDQKANTPR SKHSATEQRR RSKINDRFQM LRELIPHSDQ  300
KRDKASFLLE VIEYIQFLQE KVNKYEGSYQ GWNPDPAKLM PWRNNPKLRE SYCDQSRGMN  360
GGSGPALVFA AKFDEKTTSV SPSIPGSSAQ NPVESDTSTE TTFKAMDHHP GITSKPMPFP  420
LSMQPNFFTP VRSDGAAVPQ LPPRLPSDAE NTSQHQSMLC QTVSRATDGA AARDKLKEQE  480
LTIEGGRINI SSAYSQGLLN TLTQALQNSG VDLSQASISV QIELGKRANS RSPIPKSVVK  540
DNEILSSNQG KRHSRVASGE DSEHAPKKLK TGRN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G210500.6.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420002.10.0transcription factor BIM1 isoform X3
SwissprotQ9LEZ31e-137BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A251PBL80.0A0A251PBL8_PRUPE; Uncharacterized protein
STRINGEMJ120640.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-136bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]